RNA–Protein interactions for RNA: ENST00000474426.1

UBR3-208, Transcript of ubiquitin protein ligase E3 component n-recognin 3, humanhuman

TSL 1 (best)

Gene UBR3, Length 4,066 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBR3-208ENST00000474426 SIX2Q9NPC8 291 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 COMMD9Q9P000 198 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ZNF257Q9Y2Q1 563 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 NEUROG3Q9Y4Z2 214 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 KMT2EQ8IZD2 1858 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 NINQ8N4C6 2090 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 NHSL1Q5SYE7 1610 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 TRAV27A0A087WT01 109 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 A0A1B0GWB2 263 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 PRR32B1ATL7 298 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ISLRO14498 428 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 FOXS1O43638 330 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 CREBL2O60519 120 aaPredicted RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 ZNF737O75373 536 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 SLC2A10O95528 541 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 FGF3P11487 239 aaPredicted RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 CLDN17P56750 224 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 HERV-K104P61576 105 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ARFRP1Q13795 201 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 SLC25A30Q5SVS4 291 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ACP7Q6ZNF0 438 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 PRR15Q8IV56 129 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 CRIPAKQ8N1N5 446 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 C18orf32Q8TCD1 76 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 PSMG3-AS1Q96PY0 264 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 GPX7Q96SL4 187 aaPredicted RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 TP53TG3Q9ULZ0 132 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 EIF2AK4Q9P2K8 1649 aaKnown RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 PLAC8L1A1L4L8 177 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 RBAKDNA6NC62 111 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 FCN1O00602 326 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ARL6IP5O75915 188 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 PPP1CCP36873 323 aaKnown RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 TAS2R19P59542 299 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 TMEM258P61165 79 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 MS4A13Q5J8X5 152 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 Q6ZS92 163 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 TRAPPC6BQ86SZ2 158 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 NFE4Q86UQ8 179 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ZNF101Q8IZC7 436 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 BRK1Q8WUW1 75 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 MRPL24Q96A35 216 aaKnown RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 KLF16Q9BXK1 252 aaPredicted RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 SMDT1Q9H4I9 107 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 RNF186Q9NXI6 227 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 HHLA3Q9XRX5 114 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ZNF835Q9Y2P0 537 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 OARD1Q9Y530 152 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 MIA3Q5JRA6 1907 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 KIAA1671Q9BY89 1806 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 RGPD3A6NKT7 1758 aaPredicted RBP2.79□□□□□ -1.96
UBR3-208ENST00000474426 WDR90Q96KV7 1748 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 SHPRHQ149N8 1683 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 USP32Q8NFA0 1604 aa2.79□□□□□ -1.96
UBR3-208ENST00000474426 ATAD5Q96QE3 1844 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 hCG_1818297A0A087WSY0 165 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 MEIS3P1A6NDR6 274 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 A8MT66 165 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 SDCBPO00560 298 aaPredicted RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 SRSF10O75494 262 aaKnown RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 EIF4EP06730 217 aaKnown RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 IGLL1P15814 213 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 CRISP2P16562 243 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 LAGE3Q14657 143 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 VMA21Q3ZAQ7 101 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 LRRC37A5PQ49AS3 106 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 KLF17Q5JT82 389 aaPredicted RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 ZNF493Q6ZR52 646 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 SLC22A24Q8N4F4 322 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 STPG3Q8N7X2 389 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 CHCHD5Q9BSY4 110 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 DCTN5Q9BTE1 182 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 ZFAND3Q9H8U3 227 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 KLF13Q9Y2Y9 288 aaPredicted RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 KCNE3Q9Y6H6 103 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 COL14A1Q05707 1796 aaKnown RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 DOCK4Q8N1I0 1966 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 ARFGEF1Q9Y6D6 1849 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 ROBO1Q9Y6N7 1651 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 TLCD2A6NGC4 264 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 C2CD4DB7Z1M9 353 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 STC2O76061 302 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 ZNF286BP0CG31 522 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 CBLN1P23435 193 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 SUB1P53999 127 aaKnown RBP eCLIP2.78□□□□□ -1.96
UBR3-208ENST00000474426 KIR3DS1Q14943 382 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 RRN3P1Q2M238 152 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 AAED1Q7RTV5 226 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 LINC00596Q86U02 117 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 NUP35Q8NFH5 326 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 CMTM2Q8TAZ6 248 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 DLX4Q92988 240 aaPredicted RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 OVOL2Q9BRP0 275 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 COMMD5Q9GZQ3 224 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 AICDAQ9GZX7 198 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 PHRF1Q9P1Y6 1649 aaKnown RBP2.78□□□□□ -1.96
UBR3-208ENST00000474426 ADGRB2O60241 1585 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 A0A0D9SFI3 127 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 TMEM272A0A1B0GTI8 110 aa2.78□□□□□ -1.96
UBR3-208ENST00000474426 C5orf49A4QMS7 147 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms