RNA–Protein interactions for RNA: ENST00000471567.1

SDC3-203, Transcript of syndecan 3, humanhuman

TSL 3

Gene SDC3, Length 589 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC3-203ENST00000471567 CCR6P51684 374 aa11.77□□□□□ -0.53
SDC3-203ENST00000471567 SLURP1P55000 103 aa11.77□□□□□ -0.53
SDC3-203ENST00000471567 UBE2MP61081 183 aaKnown RBP11.77□□□□□ -0.53
SDC3-203ENST00000471567 AARDQ4LEZ3 155 aa11.77□□□□□ -0.53
SDC3-203ENST00000471567 LGI3Q8N145 548 aa11.77□□□□□ -0.53
SDC3-203ENST00000471567 CENPSQ8N2Z9 138 aa11.77□□□□□ -0.53
SDC3-203ENST00000471567 DCUN1D4Q92564 292 aa11.77□□□□□ -0.53
SDC3-203ENST00000471567 DLX4Q92988 240 aaPredicted RBP11.77□□□□□ -0.53
SDC3-203ENST00000471567 PDCD10Q9BUL8 212 aa11.77□□□□□ -0.53
SDC3-203ENST00000471567 CTNNBIP1Q9NSA3 81 aaPredicted RBP11.77□□□□□ -0.53
SDC3-203ENST00000471567 F11RQ9Y624 299 aaKnown RBP11.77□□□□□ -0.53
SDC3-203ENST00000471567 A0A0B4J2A0 478 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 INS-IGF2F8WCM5 200 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 OVOL1O14753 267 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 PLA2G10O15496 165 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 ST8SIA3O43173 380 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 WIPF1O43516 503 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 HOXD3P31249 432 aaPredicted RBP11.76□□□□□ -0.53
SDC3-203ENST00000471567 BTCP35070 178 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 C9orf66Q5T8R8 295 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 OR2C3Q8N628 320 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 GPR146Q96CH1 333 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 CXorf58Q96LI9 332 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 WDR12Q9GZL7 423 aaKnown RBP11.76□□□□□ -0.53
SDC3-203ENST00000471567 PLEKHA3Q9HB20 300 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 CACFD1Q9UGQ2 172 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 SHPKQ9UHJ6 478 aa11.76□□□□□ -0.53
SDC3-203ENST00000471567 DUXBA0A1W2PPF3 345 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 LYRM1O43325 122 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 SFT2D2O95562 160 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 IFNA17P01571 189 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 INSL3P51460 131 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 ERHP84090 104 aaKnown RBP11.75□□□□□ -0.53
SDC3-203ENST00000471567 DEFA6Q01524 100 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 ZNF846Q147U1 533 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 SLC25A24Q6NUK1 477 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 Q6ZRM9 215 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 SLC35G3Q8N808 338 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 ZNF114Q8NC26 417 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 OR1P1Q8NH06 330 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 OR52E5Q8NH55 327 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 EEF1AKMT3Q96AZ1 226 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 DMRT1Q9Y5R6 373 aa11.75□□□□□ -0.53
SDC3-203ENST00000471567 TRBV7-1A0A0A6YYK4 115 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 SEC14L6B5MCN3 397 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 TRBV12-3P01733 135 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 VAMP1P23763 118 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 SPCS3P61009 180 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 EGFEM1PQ0D2K5 195 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 PPP1R1AQ13522 171 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 KLF5Q13887 457 aaPredicted RBP11.74□□□□□ -0.53
SDC3-203ENST00000471567 TATDN3Q17R31 274 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 LRTM2Q8N967 370 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 VN1R17PQ8TDU5 208 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 PRR13Q9NZ81 148 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 ZMAT5Q9UDW3 170 aaKnown RBP11.74□□□□□ -0.53
SDC3-203ENST00000471567 CACNG5Q9UF02 275 aa11.74□□□□□ -0.53
SDC3-203ENST00000471567 SULT1A3P0DMM9 295 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 SULT1A4P0DMN0 295 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 MFAP2P55001 183 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 RPEL1Q2QD12 228 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 PDLIM3Q53GG5 364 aaPredicted RBP11.73□□□□□ -0.53
SDC3-203ENST00000471567 NMSQ5H8A3 153 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 LYZL2Q7Z4W2 148 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 ATP6V0BQ99437 205 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 ENY2Q9NPA8 101 aa11.73□□□□□ -0.53
SDC3-203ENST00000471567 BMPR1BO00238 502 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 SNCAP37840 140 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 ANKRD55Q3KP44 614 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 ACSM6Q6P461 480 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 REC114Q7Z4M0 266 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 ZNF502Q8TBZ5 544 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 CCDC140Q96MF4 163 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 ELOVL1Q9BW60 279 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 FLVCR2Q9UPI3 526 aa11.72□□□□□ -0.53
SDC3-203ENST00000471567 MEGF8Q7Z7M0 2845 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 A0A1B0GU03 582 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 C9orf170A2RU37 121 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 MFSD2BA6NFX1 497 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 GGCTO75223 188 aaKnown RBP11.71□□□□□ -0.53
SDC3-203ENST00000471567 HOXA1P49639 335 aaPredicted RBP11.71□□□□□ -0.53
SDC3-203ENST00000471567 SUB1P53999 127 aaKnown RBP eCLIP11.71□□□□□ -0.53
SDC3-203ENST00000471567 SMCO1Q147U7 214 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 SPINK9Q5DT21 86 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 CLEC19AQ6UXS0 136 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 TMED3Q9Y3Q3 217 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 S4R3C0 116 aa11.71□□□□□ -0.53
SDC3-203ENST00000471567 UPK1BO75841 260 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 IGHV3-23P01764 117 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 TCRBP04435 133 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 CLEC3BP05452 202 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 OR4E1P0C645 316 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 SLC25A6P12236 298 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 ARL3P36405 182 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 SYNJ2BPP57105 145 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 ASAH1Q13510 395 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 PVRIGQ6DKI7 326 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 MZT2BQ6NZ67 158 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 LYG2Q86SG7 212 aa11.7□□□□□ -0.54
SDC3-203ENST00000471567 GPHB5Q86YW7 130 aa11.7□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 46.9 ms