RNA–Protein interactions for RNA: ENST00000468534.1

CCDC88A-210, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 536 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-210ENST00000468534 PLGLB1Q02325 96 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 CATR1Q13166 79 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 RBMY1FQ15415 496 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 MSMO1Q15800 293 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 C1orf140Q5VVS0 124 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF429Q86V71 674 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 LRP11Q86VZ4 500 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 MSRB3Q8IXL7 192 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 C1orf174Q8IYL3 243 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 MRPL30Q8TCC3 161 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 RTN4IP1Q8WWV3 396 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 C2orf50Q96LR7 162 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 CCL13Q99616 98 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 MIEN1Q9BRT3 115 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 SNRNP25Q9BV90 132 aaKnown RBP3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 FUT9Q9Y231 359 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF443Q9Y2A4 671 aaPredicted RBP3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 FLVCR1Q9Y5Y0 555 aa3.55□□□□□ -1.84
CCDC88A-210ENST00000468534 A2ML1A8K2U0 1454 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 FANCAO15360 1455 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 CHD1O14646 1710 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 A0A087X0T9 212 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 LGALS9O00182 355 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 SLC37A4O43826 429 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 HLA-DQB1P01920 261 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 SPINK8P0C7L1 97 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 IL2RGP31785 369 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF93P35789 620 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF846Q147U1 533 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 ELOCQ15369 112 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 SPINK14Q6IE38 97 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 LINC00596Q86U02 117 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF440Q8IYI8 595 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 SGMS2Q8NHU3 365 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 ELSPBP1Q96BH3 223 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 PEBP4Q96S96 227 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF184Q99676 751 aaPredicted RBP3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 SPIN2AQ99865 258 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 SPIN2BQ9BPZ2 258 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 GINS4Q9BRT9 223 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 WDR61Q9GZS3 305 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 POLR2J3Q9H1A7 115 aaKnown RBP3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 AK3Q9UIJ7 227 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 ITGB4P16144 1822 aa3.54□□□□□ -1.84
CCDC88A-210ENST00000468534 HECW1Q76N89 1606 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 TRAV9-1A0A075B6T8 112 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 TRAV41A0A0B4J266 112 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 A0A1W2PRS3 328 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 DPRXA6NFQ7 191 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 H7C423 109 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 M0R1X1 148 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 COX7A2P2O60397 106 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 OR5AC1P0C628 307 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 GZMBP10144 247 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 NFYBP25208 207 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 SDC2P34741 201 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 INPP1P49441 399 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 NDUFV3P56181 108 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 REG3AQ06141 175 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 HES3Q5TGS1 186 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 AMTNQ6UX39 209 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 TMUB2Q71RG4 321 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 RPS19BP1Q86WX3 136 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 SAXO1Q8IYX7 474 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 RPP25LQ8N5L8 163 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 TEX29Q8N6K0 151 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF709Q8N972 641 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 OR2T10Q8NGZ9 312 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 OR10AC1Q8NH08 325 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 TOMM6Q96B49 74 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 MS4A6EQ96DS6 147 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 DPH3Q96FX2 82 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 ABHD14BQ96IU4 210 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 DUSP21Q9H596 190 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 ZNF586Q9NXT0 402 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 MARCOQ9UEW3 520 aaPredicted RBP3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 F11RQ9Y624 299 aaKnown RBP3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 PSME4Q14997 1843 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 ADAMTSL1Q8N6G6 1762 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 CCDC88BA6NC98 1476 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 CAMSAP2Q08AD1 1489 aa3.53□□□□□ -1.84
CCDC88A-210ENST00000468534 RLFQ13129 1914 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 PLXND1Q9Y4D7 1925 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 TMEM131Q92545 1883 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF106Q9H2Y7 1883 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 SYNJ1O43426 1573 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 TRBV20OR9-2A0A075B6H5 130 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 IGHV7-81A0A0B4J1V7 117 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 ZNF727A8MUV8 499 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 COX7A2LO14548 114 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 CD5LO43866 347 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 IGLV3-27P01718 113 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 IGLC1P0CG04 106 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 CRISP2P16562 243 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 IL3RAP26951 378 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 RPL22P35268 128 aaKnown RBP3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 DAPP51397 102 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 GABARAPL2P60520 117 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 DIAPH2-AS1Q14236 149 aa3.52□□□□□ -1.85
CCDC88A-210ENST00000468534 KIAA1644Q3SXP7 199 aa3.52□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms