RNA–Protein interactions for RNA: ENST00000466541.1

SHROOM3-202, Transcript of shroom family member 3, humanhuman

TSL 3

Gene SHROOM3, Length 628 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-202ENST00000466541 ENY2Q9NPA8 101 aa9.27□□□□□ -0.93
SHROOM3-202ENST00000466541 ZC4H2Q9NQZ6 224 aa9.27□□□□□ -0.93
SHROOM3-202ENST00000466541 CACNG5Q9UF02 275 aa9.27□□□□□ -0.93
SHROOM3-202ENST00000466541 MFSD2BA6NFX1 497 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 CYB5BO43169 146 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 LYRM1O43325 122 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 BRI3O95415 125 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 HLA-AP01891 365 aaKnown RBP9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 FGF2P09038 288 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 ZP3P21754 424 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 HOXA1P49639 335 aaPredicted RBP9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 SYNJ2BPP57105 145 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 PRCDQ00LT1 54 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 PPP1R1AQ13522 171 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 RPEL1Q2QD12 228 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 TMEM128Q5BJH2 165 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 CLEC19AQ6UXS0 136 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 CADM3Q8N126 398 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 LGI3Q8N145 548 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 EEF1AKMT3Q96AZ1 226 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 MISP3Q96FF7 219 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 SRSF8Q9BRL6 282 aaKnown RBP9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 DMRT1Q9Y5R6 373 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 TMEM56-RWDD3S4R434 201 aa9.26□□□□□ -0.93
SHROOM3-202ENST00000466541 IGLV11-55A0A075B6I3 123 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 PLA2G10O15496 165 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 SAP30O75446 220 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 NDUFB6O95139 128 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 DUS4LO95620 317 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 ANXA7P20073 488 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 BTCP35070 178 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 MFAP2P55001 183 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 KRTAP10-11P60412 298 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 ERHP84090 104 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 ZNF846Q147U1 533 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 ANKRD55Q3KP44 614 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 HSD17B13Q7Z5P4 300 aaPredicted RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 FAM219AQ8IW50 185 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 UBAC2Q8NBM4 344 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 PINX1Q96BK5 328 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 GALNT14Q96FL9 552 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 C7orf50Q9BRJ6 194 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 CCDC32Q9BV29 185 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 CTNNBIP1Q9NSA3 81 aaPredicted RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 THYN1Q9P016 225 aa9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 F11RQ9Y624 299 aaKnown RBP9.25□□□□□ -0.93
SHROOM3-202ENST00000466541 TRAV6A0A075B6T7 132 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 CEBPZOSA8MTT3 80 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 BMPR1BO00238 502 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 OR2C1O95371 312 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 SFT2D2O95562 160 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 IGHV3-48P01763 117 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 CLEC3BP05452 202 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 SULT1A3P0DMM9 295 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 SULT1A4P0DMN0 295 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 ARL3P36405 182 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 SNCAP37840 140 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 SRPXP78539 464 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 C4orf46Q504U0 113 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 C9orf66Q5T8R8 295 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 ZNF429Q86V71 674 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 OR2C3Q8N628 320 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 CCDC140Q96MF4 163 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 GPR61Q9BZJ8 451 aa9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 WDR12Q9GZL7 423 aaKnown RBP9.24□□□□□ -0.93
SHROOM3-202ENST00000466541 IGHV3-35A0A0C4DH35 117 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 OR2T8A6NH00 312 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 HOXB5P09067 269 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 GPR183P32249 361 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 SPCS3P61009 180 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 LINC00299Q6ZSB3 139 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 HAPLN4Q86UW8 402 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 OR1S1Q8NH92 325 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 IL22RA2Q969J5 263 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 CXorf58Q96LI9 332 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 ELOVL1Q9BW60 279 aa9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 HEYLQ9NQ87 328 aaPredicted RBP9.23□□□□□ -0.93
SHROOM3-202ENST00000466541 TRBV7-1A0A0A6YYK4 115 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 A0A0B4J2A0 478 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 FAM240BA0A1B0GVZ2 78 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 ZNF320A2RRD8 509 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 LY86O95711 162 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 SUB1P53999 127 aaKnown RBP eCLIP9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 KLF5Q13887 457 aaPredicted RBP9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 SMCO1Q147U7 214 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 TATDN3Q17R31 274 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 Q56UQ5 140 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 KPRPQ5T749 579 aaPredicted RBP9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 C11orf87Q6NUJ2 197 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 MZT2BQ6NZ67 158 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 OR1P1Q8NH06 330 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 ZNF502Q8TBZ5 544 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 SCARB1Q8WTV0 552 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 OR4C12Q96R67 309 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 C20orf85Q9H1P6 137 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 AURKAIP1Q9NWT8 199 aaPredicted RBP9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 SHPKQ9UHJ6 478 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 SELENOKQ9Y6D0 94 aa9.22□□□□□ -0.93
SHROOM3-202ENST00000466541 C9orf170A2RU37 121 aa9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 41.3 ms