RNA–Protein interactions for RNA: ENST00000463837.5

CCDC88B-204, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 5,235 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-204ENST00000463837 RELQ04864 619 aaPredicted RBP15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 CLEC7AQ9BXN2 247 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 ZNF319Q9P2F9 582 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 SNRNP200O75643 2136 aaKnown RBP15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 MIR17HGQ75NE6 70 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 PLPPR1Q8TBJ4 325 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 PRELID3AQ96N28 172 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 LOXL3P58215 753 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 VWCEQ96DN2 955 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 PRDM6Q9NQX0 595 aa15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 TDRD6O60522 2096 aaKnown RBP15.97■□□□□ 0.15
CCDC88B-204ENST00000463837 RTTNQ86VV8 2226 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 KBTBD11-OT1A0A1B0GTJ5 212 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 MST1P26927 711 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 WDR90Q96KV7 1748 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 NPIPB11E5RHQ5 1161 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 C1QTNF9P0C862 333 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 A0A1W2PRE2 83 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 APOHP02749 345 aaPredicted RBP15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 CRYGSP22914 178 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 FAM53AQ6NSI3 398 aaPredicted RBP15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 MRPL14Q6P1L8 145 aaKnown RBP15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 ZNRF1Q8ND25 227 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 BEND2Q8NDZ0 799 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 ZNF837Q96EG3 531 aaPredicted RBP15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 WDR83OSQ9Y284 106 aa15.96■□□□□ 0.15
CCDC88B-204ENST00000463837 YPEL1O60688 119 aa15.96■□□□□ 0.14
CCDC88B-204ENST00000463837 AMBPP02760 352 aa15.96■□□□□ 0.14
CCDC88B-204ENST00000463837 YPEL2Q96QA6 119 aa15.96■□□□□ 0.14
CCDC88B-204ENST00000463837 TRAV9-2A0A087WT02 112 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 ATP5LO75964 103 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 FOXL1Q12952 345 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 GFI1BQ5VTD9 330 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 PHLDA3Q9Y5J5 127 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 IL4P05112 153 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 HIST1H1AQ02539 215 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 MRPL52Q86TS9 123 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 OR52E5Q8NH55 327 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 COPS9Q8WXC6 57 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 TMEM190Q8WZ59 177 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 GPR82Q96P67 336 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 AGMATQ9BSE5 352 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 ALKBH7Q9BT30 221 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 LOC102723996A0A087X1L8 192 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 SS18L1O75177 396 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 LGALS3P17931 250 aaKnown RBP15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 CIARTQ8N365 385 aaPredicted RBP15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 ELOVL5Q9NYP7 299 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 OR11H12B2RN74 326 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 NPIPB6E9PJ23 425 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 PRSS2P07478 247 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 ATP5J2P56134 94 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 OR11H1Q8NG94 326 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 OR11H2Q8NH07 326 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 C18orf15Q96N68 181 aa15.95■□□□□ 0.14
CCDC88B-204ENST00000463837 TNFSF13O75888 250 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 MEF2CQ06413 473 aaPredicted RBP15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 TEX38Q6PEX7 206 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 C19orf67A6NJJ6 358 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 PPIAL4CA0A0B4J2A2 164 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 C15orf61A6NNL5 157 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 PPIAL4GP0DN37 164 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 TIMM23BQ5SRD1 257 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 AMMECR1LQ6DCA0 310 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 DOCK3Q8IZD9 2030 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 TRAV8-6A0A0B4J262 113 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 ADIPOQQ15848 244 aa15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 MDC1Q14676 2089 aaKnown RBP15.94■□□□□ 0.14
CCDC88B-204ENST00000463837 ZSWIM8A7E2V4 1837 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 A0A1B0GV72 72 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 QRFPP83859 136 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 UNQ5815/PRO19632Q6UWF5 114 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 TTC9CQ8N5M4 171 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 EBLN2Q6P2I7 272 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 TMEM160Q9NX00 188 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 TRAV24A0A0B4J272 114 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 TFPI2P48307 235 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 LURAP1LQ8IV03 231 aa15.93■□□□□ 0.14
CCDC88B-204ENST00000463837 PPP1R17O96001 155 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 PDLIM4P50479 330 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 TEX45Q8NA69 505 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 ZDBF2Q9HCK1 2354 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 TRBV20OR9-2A0A075B6H5 130 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 HIGD1CA8MV81 97 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 NAPSAO96009 420 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 PSG7Q13046 419 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 TM4SF20Q53R12 229 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 TTC32Q5I0X7 151 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 UPK2O00526 184 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 PF4V1P10720 104 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 PAPPA-AS1Q5QFB9 102 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 C1orf194Q5T5A4 169 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 CACNA1DQ01668 2161 aa15.92■□□□□ 0.14
CCDC88B-204ENST00000463837 CECR9P0C854 216 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 GATA2P23769 480 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 ACSF3Q4G176 576 aaPredicted RBP15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 OTORQ9NRC9 128 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 CASP8AP2Q9UKL3 1982 aa15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 RNASE7Q9H1E1 156 aaKnown RBP15.91■□□□□ 0.14
CCDC88B-204ENST00000463837 B9A039 149 aa15.91■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 32.7 ms