RNA–Protein interactions for RNA: ENST00000460162.1

PTPN4-207, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 4

Gene PTPN4, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-207ENST00000460162 NDUFA4O00483 81 aa17.01■□□□□ 0.31
PTPN4-207ENST00000460162 NCS1P62166 190 aa17.01■□□□□ 0.31
PTPN4-207ENST00000460162 SCARB1Q8WTV0 552 aa17.01■□□□□ 0.31
PTPN4-207ENST00000460162 FUNDC2Q9BWH2 189 aa17.01■□□□□ 0.31
PTPN4-207ENST00000460162 K7EIM0 57 aa17■□□□□ 0.31
PTPN4-207ENST00000460162 TSPAN4O14817 238 aa17■□□□□ 0.31
PTPN4-207ENST00000460162 TBC1D26Q86UD7 250 aa17■□□□□ 0.31
PTPN4-207ENST00000460162 SNX29P2Q8IUI4 249 aa17■□□□□ 0.31
PTPN4-207ENST00000460162 SLC38A6Q8IZM9 456 aa17■□□□□ 0.31
PTPN4-207ENST00000460162 OR2C3Q8N628 320 aa17■□□□□ 0.31
PTPN4-207ENST00000460162 F8W735 103 aaPredicted RBP16.99■□□□□ 0.31
PTPN4-207ENST00000460162 JTBO76095 146 aa16.99■□□□□ 0.31
PTPN4-207ENST00000460162 UCP3P55916 312 aa16.99■□□□□ 0.31
PTPN4-207ENST00000460162 OR1P1Q8NH06 330 aa16.99■□□□□ 0.31
PTPN4-207ENST00000460162 CHRDL1Q9BU40 450 aa16.99■□□□□ 0.31
PTPN4-207ENST00000460162 IGHV3-21A0A0B4J1V1 117 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 DBX1A6NMT0 343 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 ADMP35318 185 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 VBP1P61758 197 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 Q56UQ5 140 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 LAMTOR1Q6IAA8 161 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 UBAC2Q8NBM4 344 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 SEC22AQ96IW7 307 aa16.98■□□□□ 0.31
PTPN4-207ENST00000460162 K7EMT4 169 aa16.97■□□□□ 0.31
PTPN4-207ENST00000460162 ZNF114Q8NC26 417 aa16.97■□□□□ 0.31
PTPN4-207ENST00000460162 C20orf24Q9BUV8 137 aa16.97■□□□□ 0.31
PTPN4-207ENST00000460162 C15orf62A8K5M9 175 aa16.96■□□□□ 0.31
PTPN4-207ENST00000460162 ELK1P19419 428 aa16.96■□□□□ 0.31
PTPN4-207ENST00000460162 H2BFWTQ7Z2G1 175 aa16.96■□□□□ 0.31
PTPN4-207ENST00000460162 OR4A16Q8NH70 328 aa16.96■□□□□ 0.31
PTPN4-207ENST00000460162 OVOL2Q9BRP0 275 aa16.96■□□□□ 0.31
PTPN4-207ENST00000460162 HPGDSO60760 199 aa16.95■□□□□ 0.3
PTPN4-207ENST00000460162 IGKV1-39P01597 117 aa16.95■□□□□ 0.3
PTPN4-207ENST00000460162 IGKV1D-39P04432 117 aa16.95■□□□□ 0.3
PTPN4-207ENST00000460162 FCGR2BP31994 310 aaPredicted RBP16.95■□□□□ 0.3
PTPN4-207ENST00000460162 APOC4P55056 127 aa16.95■□□□□ 0.3
PTPN4-207ENST00000460162 PRCDQ00LT1 54 aa16.95■□□□□ 0.3
PTPN4-207ENST00000460162 RELQ04864 619 aaPredicted RBP16.95■□□□□ 0.3
PTPN4-207ENST00000460162 MRGPRFQ96AM1 343 aa16.95■□□□□ 0.3
PTPN4-207ENST00000460162 OR4C46A6NHA9 309 aa16.94■□□□□ 0.3
PTPN4-207ENST00000460162 CTSGP08311 255 aa16.94■□□□□ 0.3
PTPN4-207ENST00000460162 RORCP51449 518 aa16.94■□□□□ 0.3
PTPN4-207ENST00000460162 ZNF486Q96H40 463 aaPredicted RBP16.94■□□□□ 0.3
PTPN4-207ENST00000460162 TP53TG1Q9Y2A0 90 aa16.94■□□□□ 0.3
PTPN4-207ENST00000460162 EPPK1P58107 5090 aaKnown RBP16.93■□□□□ 0.3
PTPN4-207ENST00000460162 HYDINQ4G0P3 5121 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 I3L2K1 104 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 NUPL2O15504 423 aaKnown RBP16.93■□□□□ 0.3
PTPN4-207ENST00000460162 RND3P61587 244 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 ODF3L2Q3SX64 289 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 MZT2AQ6P582 158 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 Q6ZWC4 215 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 AP3S1Q92572 193 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 MISP3Q96FF7 219 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 TXN2Q99757 166 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 UBQLN2Q9UHD9 624 aa16.93■□□□□ 0.3
PTPN4-207ENST00000460162 IGHV3OR16-8A0A075B7F1 116 aa16.92■□□□□ 0.3
PTPN4-207ENST00000460162 M0QYG6 137 aa16.92■□□□□ 0.3
PTPN4-207ENST00000460162 MFAP4P55083 255 aa16.92■□□□□ 0.3
PTPN4-207ENST00000460162 RNASE10Q5GAN6 216 aaKnown RBP16.92■□□□□ 0.3
PTPN4-207ENST00000460162 WFDC3Q8IUB2 231 aa16.92■□□□□ 0.3
PTPN4-207ENST00000460162 ARRDC1Q8N5I2 433 aa16.92■□□□□ 0.3
PTPN4-207ENST00000460162 ZNF414Q96IQ9 312 aa16.92■□□□□ 0.3
PTPN4-207ENST00000460162 ALMS1Q8TCU4 4167 aa16.92■□□□□ 0.3
PTPN4-207ENST00000460162 KIR2DL5BA0A0G2JN68 375 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 KIR2DL5BA0A0G2JPC4 375 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 FAM25AB3EWG3 89 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 FAM25CB3EWG5 89 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 FAM25GB3EWG6 89 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 UBE2CO00762 179 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 ZNF207O43670 478 aaKnown RBP16.91■□□□□ 0.3
PTPN4-207ENST00000460162 GABARAPO95166 117 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 TBPP20226 339 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 HSPE1P61604 102 aaKnown RBP16.91■□□□□ 0.3
PTPN4-207ENST00000460162 LHFPL1Q86WI0 220 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 KIR2DL5AQ8N109 375 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 KIR2DL5BQ8NHK3 375 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 OR10C1Q96KK4 312 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 SMPXQ9UHP9 88 aa16.91■□□□□ 0.3
PTPN4-207ENST00000460162 PLECQ15149 4684 aaKnown RBP16.9■□□□□ 0.3
PTPN4-207ENST00000460162 IGHV7-4-1A0A0J9YVY3 117 aa16.9■□□□□ 0.3
PTPN4-207ENST00000460162 MT-CO2P00403 227 aa16.9■□□□□ 0.3
PTPN4-207ENST00000460162 CTSDP07339 412 aaPredicted RBP16.9■□□□□ 0.3
PTPN4-207ENST00000460162 ERHP84090 104 aaKnown RBP16.9■□□□□ 0.3
PTPN4-207ENST00000460162 NXF2Q9GZY0 626 aaKnown RBP16.9■□□□□ 0.3
PTPN4-207ENST00000460162 PGAM2P15259 253 aa16.89■□□□□ 0.29
PTPN4-207ENST00000460162 BMI1P35226 326 aa16.89■□□□□ 0.29
PTPN4-207ENST00000460162 RNASE12Q5GAN4 147 aaKnown RBP16.89■□□□□ 0.29
PTPN4-207ENST00000460162 KLK11Q9UBX7 282 aa16.89■□□□□ 0.29
PTPN4-207ENST00000460162 CHEK1O14757 476 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 SPRY2O43597 315 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 GNG7O60262 68 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 ZNF182P17025 639 aaPredicted RBP16.88■□□□□ 0.29
PTPN4-207ENST00000460162 AKR1C2P52895 323 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 PIGPP57054 158 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 CTF1Q16619 201 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 DEFB135Q30KP9 77 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 TMEM116Q8NCL8 245 aa16.88■□□□□ 0.29
PTPN4-207ENST00000460162 PINX1Q96BK5 328 aaKnown RBP16.88■□□□□ 0.29
PTPN4-207ENST00000460162 RNF2Q99496 336 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms