RNA–Protein interactions for RNA: ENST00000457312.1

SF3B4-202, Transcript of splicing factor 3b subunit 4, humanhuman

TSL 5

Gene SF3B4, Length 826 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B4-202ENST00000457312 SOCS1O15524 211 aa10.91□□□□□ -0.66
SF3B4-202ENST00000457312 RS1O15537 224 aa10.91□□□□□ -0.66
SF3B4-202ENST00000457312 P2RY1P47900 373 aa10.91□□□□□ -0.66
SF3B4-202ENST00000457312 DHRS2Q13268 280 aa10.91□□□□□ -0.66
SF3B4-202ENST00000457312 RCN1Q15293 331 aa10.91□□□□□ -0.66
SF3B4-202ENST00000457312 FCGR1BQ92637 280 aa10.91□□□□□ -0.66
SF3B4-202ENST00000457312 A0A1W2PPK0 400 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 DIRAS3O95661 229 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 IGKV3-20P01619 116 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 Q499Y3 187 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 GDF5OSQ5U4N7 250 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 GNPNAT1Q96EK6 184 aaPredicted RBP10.9□□□□□ -0.66
SF3B4-202ENST00000457312 GPHA2Q96T91 129 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 CMSS1Q9BQ75 279 aaKnown RBP10.9□□□□□ -0.66
SF3B4-202ENST00000457312 C7orf50Q9BRJ6 194 aaKnown RBP10.9□□□□□ -0.66
SF3B4-202ENST00000457312 COMMD5Q9GZQ3 224 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 HRASLSQ9HDD0 168 aa10.9□□□□□ -0.66
SF3B4-202ENST00000457312 HRASP01112 189 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 UBBP0CG47 229 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 RPS11P62280 158 aaKnown RBP eCLIP10.89□□□□□ -0.67
SF3B4-202ENST00000457312 KCTD21Q4G0X4 260 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 CCDC58Q4VC31 144 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 RBM48Q5RL73 367 aaKnown RBP10.89□□□□□ -0.67
SF3B4-202ENST00000457312 H1FOOQ8IZA3 346 aaPredicted RBP10.89□□□□□ -0.67
SF3B4-202ENST00000457312 NKAIN3Q8N8D7 197 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 RXFP4Q8TDU9 374 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 SMIM19Q96E16 107 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 Q96MT0 163 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 CIB1Q99828 191 aa10.89□□□□□ -0.67
SF3B4-202ENST00000457312 RBMX2Q9Y388 322 aaKnown RBP10.89□□□□□ -0.67
SF3B4-202ENST00000457312 A0A1W2PS18 150 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 FOXI3A8MTJ6 420 aaPredicted RBP10.88□□□□□ -0.67
SF3B4-202ENST00000457312 SIVA1O15304 175 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 FKBP6O75344 327 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 IGLV2-14P01704 120 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 CD36P16671 472 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 HNRNPA3P51991 378 aaKnown RBP10.88□□□□□ -0.67
SF3B4-202ENST00000457312 MFAP4P55083 255 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 SSX1Q16384 188 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 THOC7Q6I9Y2 204 aaKnown RBP10.88□□□□□ -0.67
SF3B4-202ENST00000457312 OR4C16Q8NGL9 310 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 TCTEX1D2Q8WW35 142 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 CCDC124Q96CT7 223 aaKnown RBP10.88□□□□□ -0.67
SF3B4-202ENST00000457312 GINS4Q9BRT9 223 aa10.88□□□□□ -0.67
SF3B4-202ENST00000457312 TRAV26-1A0A087WT03 109 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 CBY3A6NI87 242 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 FAM90A26D6RGX4 464 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 HOXA1P49639 335 aaPredicted RBP10.87□□□□□ -0.67
SF3B4-202ENST00000457312 DEFB1P60022 68 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 EIF4EBP1Q13541 118 aaPredicted RBP10.87□□□□□ -0.67
SF3B4-202ENST00000457312 FCN2Q15485 313 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 HSD17B13Q7Z5P4 300 aaPredicted RBP10.87□□□□□ -0.67
SF3B4-202ENST00000457312 SLC25A46Q96AG3 418 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 TXN2Q99757 166 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 SLC29A1Q99808 456 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 GABARAPL3Q9BY60 117 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 SLC35B3Q9H1N7 401 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 TAGLN3Q9UI15 199 aa10.87□□□□□ -0.67
SF3B4-202ENST00000457312 A0A1B0GU03 582 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 PLAC8L1A1L4L8 177 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 TMEM14DPA8MWL7 114 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 I3L2K1 104 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 J3QRK9 145 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 UPK2O00526 184 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 GNG7O60262 68 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 IGHV3-48P01763 117 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 PRM2P04554 102 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 HOXB6P17509 224 aaKnown RBP10.86□□□□□ -0.67
SF3B4-202ENST00000457312 SNRPD3P62318 126 aaKnown RBP10.86□□□□□ -0.67
SF3B4-202ENST00000457312 QRFPP83859 136 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 SCXQ7RTU7 201 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 LPAR5Q9H1C0 372 aa10.86□□□□□ -0.67
SF3B4-202ENST00000457312 A0A0J9YY99 117 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 SAC3D1A6NKF1 404 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 AQP12BA6NM10 295 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 TRAPPC2P0DI81 140 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 TRAPPC2BP0DI82 140 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 NPPCP23582 126 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 ZNF600Q6ZNG1 722 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 AQP12AQ8IXF9 295 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 ARHGAP5-AS1Q96IT6 56 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 HSD17B10Q99714 261 aaKnown RBP10.85□□□□□ -0.67
SF3B4-202ENST00000457312 GABARAPL1Q9H0R8 117 aa10.85□□□□□ -0.67
SF3B4-202ENST00000457312 NPIPB6E9PJ23 425 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 OGG1O15527 345 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 FCGR3AP08637 254 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 LIMS3P0CW19 117 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 LIMS4P0CW20 117 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 CRYBB3P26998 211 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 TMEM50BP56557 158 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 ACSM3Q53FZ2 586 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 MEDAGQ5VYS4 303 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 GLMPQ8WWB7 406 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 TRUB1Q8WWH5 349 aaKnown RBP10.84□□□□□ -0.67
SF3B4-202ENST00000457312 MAFIPQ8WZ33 124 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 LSM10Q969L4 123 aaKnown RBP10.84□□□□□ -0.67
SF3B4-202ENST00000457312 PECRQ9BY49 303 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 SPATA2Q9UM82 520 aa10.84□□□□□ -0.67
SF3B4-202ENST00000457312 LRCOL1A6NCL2 159 aa10.83□□□□□ -0.68
SF3B4-202ENST00000457312 CDK1P06493 297 aa10.83□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms