RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 GLS2Q9UI32 602 aa2.98□□□□□ -1.93
VPS29-202ENST00000447578 ZNF391Q9UJN7 358 aa2.98□□□□□ -1.93
VPS29-202ENST00000447578 ST3GAL6Q9Y274 331 aa2.98□□□□□ -1.93
VPS29-202ENST00000447578 LSM5Q9Y4Y9 91 aaKnown RBP2.98□□□□□ -1.93
VPS29-202ENST00000447578 PCDH15Q96QU1 1955 aa2.98□□□□□ -1.93
VPS29-202ENST00000447578 PQLC2LA1A4F0 135 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 C5orf49A4QMS7 147 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 CRYM-AS1A6NIL9 109 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 C21orf140B9A014 251 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 RPL36A-HNRNPH2H7BZ11 118 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 K7EPK0 472 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 TAAR5O14804 337 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 PDCD6O75340 191 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 DEDDO75618 318 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 OR7C1O76099 320 aaPredicted RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 TNFSF15O95150 251 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 APOC3P02656 99 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 GIG44P09565 113 aaPredicted RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 ZNF708P17019 499 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 RCC1P18754 421 aaPredicted RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 PMCHP20382 165 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 ARR3P36575 388 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 NBL1P41271 181 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 AKR1C2P52895 323 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 RBM11P57052 281 aaKnown RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 NUTF2P61970 127 aaKnown RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 EIF5AP63241 154 aaKnown RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 AKR1C1Q04828 323 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 PRDX4Q13162 271 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 IL15RAQ13261 267 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 SMUG1Q53HV7 270 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 RPL7L1Q6DKI1 246 aaKnown RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 CALHM1Q8IU99 346 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 BAP18Q8IXM2 172 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 CEND1Q8N111 149 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 LGI3Q8N145 548 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 FAM58AQ8N1B3 248 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 FAM71E2Q8N5Q1 922 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 CD177Q8N6Q3 437 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 C14orf178Q8N769 122 aaPredicted RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 SLC30A7Q8NEW0 376 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 OR10AD1Q8NGE0 317 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 OR5L1Q8NGL2 311 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 OR11L1Q8NGX0 322 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 NEK7Q8TDX7 302 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 RTN4IP1Q8WWV3 396 aaPredicted RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 ARL11Q969Q4 196 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 APOBEC3DQ96AK3 386 aaPredicted RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 FAM122AQ96E09 287 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 P2RX4Q99571 388 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 SMIM3Q9BZL3 60 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 FGF23Q9GZV9 251 aaPredicted RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 OR51B6Q9H340 312 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 TREM1Q9NP99 234 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 C12orf4Q9NQ89 552 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 MMP26Q9NRE1 261 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 TMEM100Q9NV29 134 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 RCL1Q9Y2P8 373 aaKnown RBP2.97□□□□□ -1.93
VPS29-202ENST00000447578 EML5Q05BV3 1969 aa2.97□□□□□ -1.93
VPS29-202ENST00000447578 ZNF318Q5VUA4 2279 aa2.96□□□□□ -1.93
VPS29-202ENST00000447578 FAM168BA1KXE4 195 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 TMEM218A2RU14 115 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 RAB19A4D1S5 217 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 ARGFXA6NJG6 315 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 A8MU10 97 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 F8W036 122 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SMKR1H3BMG3 65 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 KLRC4-KLRK1H3BQV0 150 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 DNASE2O00115 360 aaPredicted RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 BET1O15155 118 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SLC31A2O15432 143 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 NUPL2O15504 423 aaKnown RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 FGF16O43320 207 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 MED6O75586 246 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 MMP23AO75900 390 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 ACTL6AO96019 429 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 CST4P01036 141 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 PPYP01298 95 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 HBE1P02100 147 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SCTP09683 121 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 CHTF8P0CG12 524 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 COX5BP10606 129 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 FUT3P21217 361 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 RPL12P30050 165 aaKnown RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 APLNRP35414 380 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 HAAOP46952 286 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 FGF12P61328 243 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 ARG2P78540 354 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 KIAA0087Q14695 138 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 TSC22D1Q15714 1073 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 CEACAM21Q3KPI0 293 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SPIN3Q5JUX0 258 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 HES3Q5TGS1 186 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 EIF5AL1Q6IS14 154 aaKnown RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 HAGHLQ6PII5 290 aaPredicted RBP2.96□□□□□ -1.94
VPS29-202ENST00000447578 LYZL2Q7Z4W2 148 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 DPPA2Q7Z7J5 298 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 MKXQ8IYA7 352 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 SAXO1Q8IYX7 474 aa2.96□□□□□ -1.94
VPS29-202ENST00000447578 TMEM61Q8N0U2 210 aa2.96□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 69 ms