RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 ZNF414Q96IQ9 312 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IP6K3Q96PC2 410 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 ERMAPQ96PL5 475 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SPIN2AQ99865 258 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SPIN2BQ9BPZ2 258 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 C2orf88Q9BSF0 95 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CHAC1Q9BUX1 264 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 GABARAPL1Q9H0R8 117 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 C8orf17Q9NRJ1 99 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SLC39A9Q9NUM3 307 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM38BQ9NVV0 291 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 PPIP5K1Q6PFW1 1433 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CABIN1Q9Y6J0 2220 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV7-4-1A0A0J9YVY3 117 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SIGLEC16A6NMB1 481 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 KRTAP4-16G5E9R7 235 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 DLEU1O43261 78 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CD7P09564 240 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 MPC1LP0DKB6 136 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SMIM10L2AP0DMW4 78 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SMIM10L2BP0DMW5 78 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 RPS4Y1P22090 263 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 NFYBP25208 207 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 NPY1RP25929 384 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 S100A11P31949 105 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 AMTNQ6UX39 209 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IDO2Q6ZQW0 420 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF767PQ75MW2 155 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CEND1Q8N111 149 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 DAND5Q8N907 189 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM229BQ8NBD8 167 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 RTN4IP1Q8WWV3 396 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TOMM6Q96B49 74 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 BORCS8Q96FH0 119 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 MGLLQ99685 303 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CHCHD7Q9BUK0 85 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TSSK6Q9BXA6 273 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 NRAPQ86VF7 1730 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TMEM223A0PJW6 202 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 H0YJW9 148 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 LST1O00453 97 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 RBFOX2O43251 390 aaKnown RBP eCLIP1.67□□□□□ -2.142e-7■■■■■ 40.6
CCDC88A-208ENST00000444458 IGKV1-39P01597 117 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IGLV3-25P01717 112 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 HLA-DQA1P01909 254 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 C1QCP02747 245 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IGKV1D-39P04432 117 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 RPL7P18124 248 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 NTF3P20783 257 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CMC4P56277 68 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 LINC00313P59037 77 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 RASL11AQ6T310 242 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 RNF175Q8N4F7 328 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TP53RKQ96S44 253 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SHANK2-AS3Q9BTD1 123 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 PDCD10Q9BUL8 212 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 POPDC3Q9HBV1 291 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TAAR3PQ9P1P4 343 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF492Q9P255 531 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SNX12Q9UMY4 172 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CELA1Q9UNI1 258 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 NOS1P29475 1434 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 ARHGAP31Q2M1Z3 1444 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 PKD1L3Q7Z443 1732 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IFITM10A6NMD0 228 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 K7EP13 123 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 IGLV3-27P01718 113 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CNTFRP26992 372 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 SRP14P37108 136 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 DAPP51397 102 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 MRPS10P82664 201 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 AMN1Q8IY45 258 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF283Q8N7M2 679 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 CMBLQ96DG6 245 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 GINS4Q9BRT9 223 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 C1QTNF6Q9BXI9 259 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 EFCAB1Q9HAE3 211 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF230Q9UIE0 474 aaPredicted RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 MCTS1Q9ULC4 181 aaKnown RBP1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 TOPAZ1Q8N9V7 1692 aa1.67□□□□□ -2.14
CCDC88A-208ENST00000444458 ABCC12Q96J65 1359 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ADGRL2O95490 1459 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ZFHX2Q9C0A1 2572 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 MIA3Q5JRA6 1907 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHV3-72A0A0B4J1Y9 119 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 DHRS12A0PJE2 317 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 GGT3PA6NGU5 568 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 LYZL6O75951 148 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 OR2H2O95918 312 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 IFNGP01579 166 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 IGHG2P01859 326 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 CFC1BP0CG36 223 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 BCL2P10415 239 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 ZNF25P17030 456 aaPredicted RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 CD200P41217 278 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 RPS28P62857 69 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 EIF5AP63241 154 aaKnown RBP1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 DNLZQ5SXM8 178 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 FKBP1CQ5VVH2 108 aa1.66□□□□□ -2.14
CCDC88A-208ENST00000444458 C4orf22Q6V702 233 aa1.66□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms