RNA–Protein interactions for RNA: ENST00000429895.5

PTPRF-206, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 6,312 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-206ENST00000429895 ZFC3H1O60293 1989 aaKnown RBP12.94□□□□□ -0.34
PTPRF-206ENST00000429895 MEF2CQ06413 473 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 FER1L6-AS1Q8NA97 138 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 ZNF98A6NK75 572 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 NBR2O15453 112 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 FBLN7Q53RD9 439 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 OR10J3Q5JRS4 329 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 RBMY1BA6NDE4 496 aaKnown RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 RBMY1EA6NEQ0 496 aaKnown RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 APOMO95445 188 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 RBMY1DP0C7P1 496 aaKnown RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 RBMY1A1P0DJD3 496 aaKnown RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 RBMY1CP0DJD4 496 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 UBE2DNLQ8IWF7 75 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 ZNF436-AS1Q8NC38 126 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 C8orf46Q8TAG6 207 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 RCC1LQ96I51 464 aaKnown RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 SAA2-SAA4A0A096LPE2 208 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 TGFBR3LH3BV60 316 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 SAA2P0DJI9 122 aaPredicted RBP12.93□□□□□ -0.34
PTPRF-206ENST00000429895 LINC00312Q9Y6C7 94 aa12.93□□□□□ -0.34
PTPRF-206ENST00000429895 LY75O60449 1722 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 PAX1P15863 534 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 NRN1LQ496H8 165 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 RPP21Q9H633 154 aaKnown RBP12.92□□□□□ -0.34
PTPRF-206ENST00000429895 A0A0G2JK05 382 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 THBDP07204 575 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 GTSCR1Q86UQ5 136 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 PMCHL2Q9BQD1 86 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 ASXL3Q9C0F0 2248 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 TRAV12-3A0A0B4J271 114 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 IFI6P09912 130 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 ZNF883P0CG24 379 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 VGLL1Q99990 258 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 TRGV4A0A0C4DH28 118 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 CD33P20138 364 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 TMEM95Q3KNT9 176 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 CASP8AP2Q9UKL3 1982 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 ADAMTS7Q9UKP4 1686 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 CD200R1LQ6Q8B3 271 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 C14orf144Q96I85 54 aa12.92□□□□□ -0.34
PTPRF-206ENST00000429895 TRAV40A0A0B4J280 105 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 CRPP02741 224 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 UMODP07911 640 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 PLPPR1Q8TBJ4 325 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 JMJD8Q96S16 334 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 C11orf68Q9H3H3 251 aaKnown RBP12.91□□□□□ -0.34
PTPRF-206ENST00000429895 POLR2AP24928 1970 aaKnown RBP12.91□□□□□ -0.34
PTPRF-206ENST00000429895 LAMB2P55268 1798 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 ZNF646O15015 1829 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-206ENST00000429895 A0A1B0GUT8 65 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 ATP5IP56385 69 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-206ENST00000429895 C1QTNF5Q9BXJ0 243 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 LEPP41159 167 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 PSMG3Q9BT73 122 aaPredicted RBP12.91□□□□□ -0.34
PTPRF-206ENST00000429895 CCDC88CQ9P219 2028 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 TMEM50AO95807 157 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 DPRXA6NFQ7 191 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 IQCF6A8MYZ5 107 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 DEFB121Q5J5C9 76 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 IL36BQ9NZH7 164 aa12.91□□□□□ -0.34
PTPRF-206ENST00000429895 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-206ENST00000429895 PRR32B1ATL7 298 aa12.9□□□□□ -0.34
PTPRF-206ENST00000429895 ZNF585BQ52M93 769 aa12.9□□□□□ -0.34
PTPRF-206ENST00000429895 LHFPL4Q7Z7J7 247 aa12.9□□□□□ -0.34
PTPRF-206ENST00000429895 AICDAQ9GZX7 198 aa12.9□□□□□ -0.34
PTPRF-206ENST00000429895 MYOD1P15172 320 aa12.9□□□□□ -0.34
PTPRF-206ENST00000429895 ZXDCQ2QGD7 858 aaPredicted RBP12.9□□□□□ -0.34
PTPRF-206ENST00000429895 COL4A5P29400 1685 aa12.9□□□□□ -0.34
PTPRF-206ENST00000429895 TRAV14DV4A0A0A6YYC5 116 aa12.9□□□□□ -0.34
PTPRF-206ENST00000429895 PPIFP30405 207 aaKnown RBP12.9□□□□□ -0.34
PTPRF-206ENST00000429895 DDTP30046 118 aa12.9□□□□□ -0.35
PTPRF-206ENST00000429895 RHOGP84095 191 aa12.9□□□□□ -0.35
PTPRF-206ENST00000429895 ATP5LO75964 103 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 TYMSP04818 313 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 ANKRD31Q8N7Z5 1873 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 CTAG1AP78358 180 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 TTC9CQ8N5M4 171 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 LRTM2Q8N967 370 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 SPACA3Q8IXA5 215 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 TM2D1Q9BX74 207 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 KIR3DL3Q8N743 410 aa12.89□□□□□ -0.35
PTPRF-206ENST00000429895 FAM19A2Q8N3H0 131 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 ST20Q9HBF5 79 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 LTBP4Q8N2S1 1624 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 MDC1Q14676 2089 aaKnown RBP12.88□□□□□ -0.35
PTPRF-206ENST00000429895 NPIPB13A6NJU9 1138 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP12.88□□□□□ -0.35
PTPRF-206ENST00000429895 SAP30O75446 220 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 IGHV4-39P01824 125 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 SFTA2Q6UW10 78 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 GGACTQ9BVM4 153 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 MPTX1A8MV57 137 aa12.88□□□□□ -0.35
PTPRF-206ENST00000429895 NXT2Q9NPJ8 142 aaKnown RBP12.88□□□□□ -0.35
PTPRF-206ENST00000429895 TMEM133Q9H2Q1 129 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 VCX2Q9H322 139 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 SPRR3Q9UBC9 169 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 SLC25A20O43772 301 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 OR9G4Q8NGQ1 327 aa12.87□□□□□ -0.35
PTPRF-206ENST00000429895 IMMP1LQ96LU5 166 aa12.87□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms