RNA–Protein interactions for RNA: ENST00000423463.6

VPS13A-208, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 2

Gene VPS13A, Length 2,702 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-208ENST00000423463 H3BMQ9 156 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 H7C2Y5 167 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 NBR2O15453 112 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 NDUFA3O95167 84 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 DUS4LO95620 317 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OPN1MWP04001 364 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OPN1MW2P0DN77 364 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OPN1MW3P0DN78 364 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PTHLHP12272 177 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 NFYAP23511 347 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 FCGR2CP31995 323 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 RCVRNP35243 200 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 NPBWR1P48145 328 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 KRTAP10-3P60369 221 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 MRPS10P82664 201 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 SSBP1Q04837 148 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 CBX3Q13185 183 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 C5orf64Q2M2E5 130 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF660Q6AZW8 331 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 LPCAT3Q6P1A2 487 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 FAM131AQ6UXB0 335 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 SLC35E3Q7Z769 313 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PDPNQ86YL7 162 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 FAM71E2Q8N5Q1 922 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 GVQW1Q8N7I0 195 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OR5AU1Q8NGC0 362 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OR5H2Q8NGV7 314 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OR6F1Q8NGZ6 308 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 ISOC1Q96CN7 298 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 FLYWCH2Q96CP2 140 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 HSD17B10Q99714 261 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 GON7Q9BXV9 100 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 NXF2Q9GZY0 626 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OR2D2Q9H210 308 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 SLC35D1Q9NTN3 355 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 SDHAF2Q9NX18 166 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 EXTL2Q9UBQ6 330 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 RSL24D1Q9UHA3 163 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF107Q9UII5 783 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 RBMX2Q9Y388 322 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PRELID3BQ9Y3B1 194 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 COL6A5A8TX70 2615 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PCLOQ9Y6V0 5065 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 IGHV4-4A0A075B6R2 117 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PSMB11A5LHX3 300 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 CCDC160A6NGH7 325 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 MSGN1A6NI15 193 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 CCL24O00175 119 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 CTDSPLO15194 276 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 RGS5O15539 181 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PPYP01298 95 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 HLA-DRB1P01911 266 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 IGF1P05019 195 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 TBPP20226 339 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 DUTP33316 252 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 SLC35B1P78383 322 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 TMEM267Q0VDI3 215 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PSG5Q15238 335 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 MMDQ15546 238 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 RTL8BQ17RB0 113 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 ACTBL2Q562R1 376 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 PYHIN1Q6K0P9 492 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 SNX29P2Q8IUI4 249 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF645Q8N7E2 425 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 DRAXINQ8NBI3 349 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OR4X2Q8NGF9 303 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 MCFD2Q8NI22 146 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 DGCR14Q96DF8 476 aaKnown RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 DIRAS2Q96HU8 199 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 SLC5A7Q9GZV3 580 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 MIXL1Q9H2W2 232 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 OR51J1Q9H342 316 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 CCL28Q9NRJ3 127 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 EHFQ9NZC4 300 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 MTFP1Q9UDX5 166 aa1.92□□□□□ -2.1
VPS13A-208ENST00000423463 ZNF469Q96JG9 3925 aaPredicted RBP1.92□□□□□ -2.1
VPS13A-208ENST00000423463 A0A087WW49 117 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 IGKV1D-13A0A0B4J2D9 117 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 C13orf42A0A1B0GVH6 325 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 TCRBV4S1A1TA0A5B7 111 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 MEIS3P1A6NDR6 274 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 GABARAPH6UMI1 98 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 J3QRK9 145 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 RBFOX2O43251 390 aaKnown RBP eCLIP1.91□□□□□ -2.1
VPS13A-208ENST00000423463 PMP2P02689 132 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 IFNA6P05013 189 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 FCER2P06734 321 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 CRYGBP07316 175 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 IGKV1-13P0DP09 117 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 CD28P10747 220 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 AADACP22760 399 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 PTBP1P26599 531 aaKnown RBP eCLIP1.91□□□□□ -2.16e-9■■■■■ 40.5
VPS13A-208ENST00000423463 HLA-DMAP28067 261 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 SLC6A1P30531 599 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 KIR2DS2P43631 304 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 TSPAN5P62079 268 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 CATR1Q13166 79 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 SRSF9Q13242 221 aaKnown RBP eCLIP1.91□□□□□ -2.1
VPS13A-208ENST00000423463 VMA21Q3ZAQ7 101 aa1.91□□□□□ -2.1
VPS13A-208ENST00000423463 VAX1Q5SQQ9 334 aa1.91□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 62.1 ms