RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 NPBQ8NG41 125 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 LYPD6BQ8NI32 183 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 RXFP4Q8TDU9 374 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 ARPC1AQ92747 370 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 OR5B12Q96R08 314 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 FBXL15Q9H469 300 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 ARL2-SNX15V9GYD0 113 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 WDFY3Q8IZQ1 3526 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 IGF2RP11717 2491 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 LY6HO94772 140 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 RNASE2P10153 161 aaKnown RBP6.78□□□□□ -1.32
USP54-203ENST00000418501 OR10J1P30954 320 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 C5orf64Q2M2E5 130 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 TMEM249Q2WGJ8 235 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 CYP2G1PQ6ZSU1 146 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 C16orf82Q7Z2V1 217 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 RCC1LQ96I51 464 aaKnown RBP6.78□□□□□ -1.32
USP54-203ENST00000418501 CACNA1DQ01668 2161 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 TRAV3A0A0B4J244 114 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 ODF3BA8MYP8 253 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 TMEM250H0YL14 139 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 MT-ND4LP03901 98 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 MFAP4P55083 255 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 BRWD1-AS2P59051 145 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 AKIRIN2Q53H80 203 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 TREML4Q6UXN2 200 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 EAF1Q96JC9 268 aaPredicted RBP6.78□□□□□ -1.32
USP54-203ENST00000418501 SLC25A22Q9H936 323 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 RPS10P5Q9NQ39 176 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 BIN3Q9NQY0 253 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 TLN1Q9Y490 2541 aaKnown RBP6.78□□□□□ -1.32
USP54-203ENST00000418501 LINC00587B1AMM8 73 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 IL6RP08887 468 aaPredicted RBP6.78□□□□□ -1.32
USP54-203ENST00000418501 C10orf113Q5VZT2 155 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 TCEAL7Q9BRU2 100 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 SIRPDQ9H106 197 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 C7orf69Q9H7B7 122 aa6.78□□□□□ -1.32
USP54-203ENST00000418501 CEP295Q9C0D2 2601 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 PLCE1Q9P212 2302 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 CD5P06127 495 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 OR5G3P0C626 314 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 PAX1P15863 534 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 HOXB4P17483 251 aaPredicted RBP6.77□□□□□ -1.33
USP54-203ENST00000418501 RAB9AP51151 201 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 STPG3Q8N7X2 389 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 OR4F5Q8NH21 305 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 Q8WTZ3 238 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 RAB24Q969Q5 203 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 OR4F4Q96R69 305 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 KIAA2026Q5HYC2 2103 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 LOC102723971A0A1B0GUV8 181 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 A0A1W2PRD5 423 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 A0A1W2PRF3 423 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 A0A1W2PRM7 423 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 PPP1R2P9O14990 202 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 ZNF562Q6V9R5 426 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 DNAJC4Q9NNZ3 241 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 ZNF355PQ9NSJ1 428 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 F11RQ9Y624 299 aaKnown RBP6.77□□□□□ -1.33
USP54-203ENST00000418501 ZNF727A8MUV8 499 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 HYPMO75409 117 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 LMO4P61968 165 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 SSMEM1Q8WWF3 244 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 TRGV9Q99603 122 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 TNFRSF19Q9NS68 423 aa6.77□□□□□ -1.33
USP54-203ENST00000418501 DIDO1Q9BTC0 2240 aaKnown RBP6.77□□□□□ -1.33
USP54-203ENST00000418501 IGHV1-69DA0A0B4J2H0 117 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 SEC14L6B5MCN3 397 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 K7EQM0 130 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 OR7C2O60412 319 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 IGHV1-69P01742 117 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 LINC00205P59089 165 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 FAM78BQ5VT40 261 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 SAV1Q9H4B6 383 aaPredicted RBP6.76□□□□□ -1.33
USP54-203ENST00000418501 TMEM231Q9H6L2 316 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 FUT9Q9Y231 359 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 MOB4Q9Y3A3 225 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 PUS1Q9Y606 427 aaKnown RBP eCLIP6.76□□□□□ -1.33
USP54-203ENST00000418501 TCRBV4S1A1TA0A5B7 111 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 LY6LH3BQJ8 138 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 GNG7O60262 68 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 C8orf88P0DMB2 117 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 MEOX2P50222 304 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 MEF2BQ02080 365 aaPredicted RBP6.76□□□□□ -1.33
USP54-203ENST00000418501 ARL16Q0P5N6 197 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 MIC13Q5XKP0 118 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 OR4X1Q8NH49 305 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 NAT8Q9UHE5 227 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 PCNX1Q96RV3 2341 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 A0A1W2PPI3 338 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 C1QL1O75973 258 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 S100A9P06702 114 aaKnown RBP6.76□□□□□ -1.33
USP54-203ENST00000418501 S100A6P06703 90 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 HNF1AP20823 631 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 BMI1P35226 326 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 RND2P52198 227 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 TIGITQ495A1 244 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 Q56UQ5 140 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 PVRIGQ6DKI7 326 aa6.76□□□□□ -1.33
USP54-203ENST00000418501 TXN2Q99757 166 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms