RNA–Protein interactions for RNA: ENST00000409458.3

GPNMB-203, Transcript of glycoprotein nmb, humanhuman

TSL 1 (best) BASIC

Gene GPNMB, Length 1,673 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-203ENST00000409458 GCN1Q92616 2671 aaKnown RBP11.2□□□□□ -0.62
GPNMB-203ENST00000409458 TGFAP01135 160 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 FAM106CPP0CH98 169 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 APELAP0DMC3 54 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 OR13C7P0DN81 318 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 BRS3P32247 399 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 SNCAP37840 140 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 DLK1P80370 383 aa11.2□□□□□ -0.62
GPNMB-203ENST00000409458 SRSF12Q8WXF0 261 aaKnown RBP11.2□□□□□ -0.62
GPNMB-203ENST00000409458 CELSR1Q9NYQ6 3014 aa11.19□□□□□ -0.62
GPNMB-203ENST00000409458 AKAP9Q99996 3911 aa11.19□□□□□ -0.62
GPNMB-203ENST00000409458 NCBP2LA6PVI3 153 aaKnown RBP11.19□□□□□ -0.62
GPNMB-203ENST00000409458 AREGP15514 252 aa11.19□□□□□ -0.62
GPNMB-203ENST00000409458 MDKP21741 143 aaPredicted RBP11.19□□□□□ -0.62
GPNMB-203ENST00000409458 FHITP49789 147 aa11.19□□□□□ -0.62
GPNMB-203ENST00000409458 Q6ZRG5 221 aa11.19□□□□□ -0.62
GPNMB-203ENST00000409458 GGACTQ9BVM4 153 aa11.19□□□□□ -0.62
GPNMB-203ENST00000409458 MED9Q9NWA0 146 aa11.19□□□□□ -0.62
GPNMB-203ENST00000409458 MAP1AP78559 2803 aaPredicted RBP11.19□□□□□ -0.62
GPNMB-203ENST00000409458 SMCO3A2RU48 225 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 J3QLI3 93 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 ATP5IP56385 69 aaPredicted RBP11.18□□□□□ -0.62
GPNMB-203ENST00000409458 ARSJQ5FYB0 599 aaPredicted RBP11.18□□□□□ -0.62
GPNMB-203ENST00000409458 PXDC1Q5TGL8 231 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 C19orf35Q6ZS72 473 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 Q8N9W7 124 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 WFDC11Q8NEX6 87 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 SAT2Q96F10 170 aaPredicted RBP11.18□□□□□ -0.62
GPNMB-203ENST00000409458 CITED4Q96RK1 184 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 P2RX4Q99571 388 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 PSMG3Q9BT73 122 aaPredicted RBP11.18□□□□□ -0.62
GPNMB-203ENST00000409458 PFDN2Q9UHV9 154 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 WDR83OSQ9Y284 106 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 FBXO7Q9Y3I1 522 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 NAV3Q8IVL0 2385 aa11.18□□□□□ -0.62
GPNMB-203ENST00000409458 PRH1P02810 166 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 TREML4Q6UXN2 200 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 SSMEM1Q8WWF3 244 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 NPCDR1Q9BY65 106 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 CNIH1O95406 144 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 CAMLGP49069 296 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 RAB5CP51148 216 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 NDPQ00604 133 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 FXYD3Q14802 87 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 BTNL8Q6UX41 500 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 MRPL41Q8IXM3 137 aaKnown RBP11.17□□□□□ -0.62
GPNMB-203ENST00000409458 ZNF114Q8NC26 417 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 FAM213BQ8TBF2 198 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 MEGF9Q9H1U4 602 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 PARP11Q9NR21 331 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 TIMM9Q9Y5J7 89 aa11.17□□□□□ -0.62
GPNMB-203ENST00000409458 ZNF469Q96JG9 3925 aaPredicted RBP11.16□□□□□ -0.62
GPNMB-203ENST00000409458 MFSD2BA6NFX1 497 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 UMAD1C9J7I0 102 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 ELLP55199 621 aaPredicted RBP11.16□□□□□ -0.62
GPNMB-203ENST00000409458 BLOC1S1P78537 153 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 AKR1C8PQ5T2L2 129 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 CENPVQ7Z7K6 275 aaPredicted RBP11.16□□□□□ -0.62
GPNMB-203ENST00000409458 PIFOQ8TCI5 191 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 FAM103A1Q9BTL3 118 aaKnown RBP11.16□□□□□ -0.62
GPNMB-203ENST00000409458 HRH4Q9H3N8 390 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 VSIRQ9H7M9 311 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 C1RLQ9NZP8 487 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 PDZD2O15018 2839 aa11.16□□□□□ -0.62
GPNMB-203ENST00000409458 TRIM77I1YAP6 450 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 SUB1P53999 127 aaKnown RBP eCLIP11.15□□□□□ -0.62
GPNMB-203ENST00000409458 MFAP2P55001 183 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 AKR1C1Q04828 323 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 CD69Q07108 199 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 ZNF616Q08AN1 781 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 MLANAQ16655 118 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 ACSM6Q6P461 480 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 CIARTQ8N365 385 aaPredicted RBP11.15□□□□□ -0.62
GPNMB-203ENST00000409458 ABHD5Q8WTS1 349 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 MGST2Q99735 147 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 FAM96BQ9Y3D0 163 aa11.15□□□□□ -0.62
GPNMB-203ENST00000409458 PRRC2AP48634 2157 aaKnown RBP11.15□□□□□ -0.62
GPNMB-203ENST00000409458 FNDC10F2Z333 226 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 FBP1P09467 338 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 CX3CL1P78423 397 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 AANATQ16613 207 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 PVRIGQ6DKI7 326 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 ZNF562Q6V9R5 426 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 SLC16A13Q7RTY0 426 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 HSD17B13Q7Z5P4 300 aaPredicted RBP11.14□□□□□ -0.63
GPNMB-203ENST00000409458 TMEM219Q86XT9 240 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 RNASEH2CQ8TDP1 164 aaKnown RBP11.14□□□□□ -0.63
GPNMB-203ENST00000409458 ARPC1AQ92747 370 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 SSX3Q99909 188 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 SRSF8Q9BRL6 282 aaKnown RBP11.14□□□□□ -0.63
GPNMB-203ENST00000409458 FNDC4Q9H6D8 234 aaPredicted RBP11.14□□□□□ -0.63
GPNMB-203ENST00000409458 NPVFQ9HCQ7 196 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 LSM4Q9Y4Z0 139 aaKnown RBP11.14□□□□□ -0.63
GPNMB-203ENST00000409458 IGHV7-81A0A0B4J1V7 117 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 MDFIC2A0A1B0GVS7 189 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 C17orf112F2Z3M2 114 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 HLA-DRB1P01911 266 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 SERF2P84101 59 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 GAMTQ14353 236 aa11.14□□□□□ -0.63
GPNMB-203ENST00000409458 CYB5R2Q6BCY4 276 aa11.14□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms