RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 FBLN7Q53RD9 439 aa5.13□□□□□ -1.59
SCN1A-203ENST00000409050 C8orf46Q8TAG6 207 aa5.13□□□□□ -1.59
SCN1A-203ENST00000409050 PHLDA1Q8WV24 401 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-203ENST00000409050 SRXN1Q9BYN0 137 aa5.13□□□□□ -1.59
SCN1A-203ENST00000409050 CHCHD2Q9Y6H1 151 aaPredicted RBP5.13□□□□□ -1.59
SCN1A-203ENST00000409050 NUP205Q92621 2012 aa5.13□□□□□ -1.59
SCN1A-203ENST00000409050 IGKV3D-15A0A087WSY6 115 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 TRAV14DV4A0A0A6YYC5 116 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 TRAV8-6A0A0B4J262 113 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 H7C2G1 150 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 GCSAMLQ5JQS6 135 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 C1orf194Q5T5A4 169 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 NEGR1Q7Z3B1 354 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 PPP1R32Q7Z5V6 425 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 OR10W1Q8NGF6 305 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 AMBPP02760 352 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF688P0C7X2 276 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 PRSS53Q2L4Q9 553 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 TRGV9Q99603 122 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 CGAP01215 116 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 TEX38Q6PEX7 206 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 A0A1W2PPE3 182 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 HIGD1CA8MV81 97 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 GGTLC3B5MD39 225 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 J3KRW8 73 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 IGFBP2P18065 325 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 C9orf139Q6ZV77 190 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 CENPVQ7Z7K6 275 aaPredicted RBP5.12□□□□□ -1.59
SCN1A-203ENST00000409050 RPRMLQ8N4K4 120 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 TTC3P53804 2025 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 A0A1W2PRD5 423 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 A0A1W2PRF3 423 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 A0A1W2PRM7 423 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 J3QRE1 110 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 LYL1P12980 280 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 HTN1P15515 57 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 LHFPL1Q86WI0 220 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 RNF125Q96EQ8 232 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 DCTN5Q9BTE1 182 aa5.12□□□□□ -1.59
SCN1A-203ENST00000409050 SCO2A0A1W2PP80 73 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 GRIFINA4D1Z8 144 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 C17orf100A8MU93 164 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF585BQ52M93 769 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 MRPL14Q6P1L8 145 aaKnown RBP5.11□□□□□ -1.59
SCN1A-203ENST00000409050 TMEM167AQ8TBQ9 72 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 RNASE6Q93091 150 aaKnown RBP5.11□□□□□ -1.59
SCN1A-203ENST00000409050 ABHD17AQ96GS6 310 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 RNF126Q9BV68 326 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 PRSS22Q9GZN4 317 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 PSG8Q9UQ74 426 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 F11RQ9Y624 299 aaKnown RBP5.11□□□□□ -1.59
SCN1A-203ENST00000409050 IGHV2OR16-5A0A0B4J2B6 119 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 A0A1W2PRS3 328 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 C9orf172C9J069 976 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 MESP2Q0VG99 397 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 RASL10AQ92737 203 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 SLC25A28Q96A46 364 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 IFI27L1Q96BM0 104 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 IMMP1LQ96LU5 166 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF71Q9NQZ8 489 aaPredicted RBP5.11□□□□□ -1.59
SCN1A-203ENST00000409050 SMCHD1A6NHR9 2005 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 TRAV8-2A0A0B4J237 113 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 MMP23AO75900 390 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 SERF1AO75920 110 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 OR9G9P0C7N8 305 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 PDE6HQ13956 83 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 GAGE13Q4V321 117 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF826PQ6ZT77 177 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 LURAP1LQ8IV03 231 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF479Q96JC4 524 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 TMEM133Q9H2Q1 129 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 ERG28Q9UKR5 140 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 MEX3AA1L020 520 aaKnown RBP5.11□□□□□ -1.59
SCN1A-203ENST00000409050 CRPP02741 224 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 IL9P15248 144 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 SRSF2Q01130 221 aaKnown RBP5.11□□□□□ -1.59
SCN1A-203ENST00000409050 CSRP2Q16527 193 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 SLC25A45Q8N413 288 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 LINC00477Q96M19 166 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 DUX3Q96PT4 197 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 ANAPC13Q9BS18 74 aa5.11□□□□□ -1.59
SCN1A-203ENST00000409050 PRR32B1ATL7 298 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 PF4P02776 101 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 MDKP21741 143 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 SSBP2P81877 361 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 PAX2Q02962 417 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 SRSF6Q13247 344 aaKnown RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 ZFAND6Q6FIF0 208 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF418Q8TF45 676 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 CHAC1Q9BUX1 264 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 ZNF646O15015 1829 aaPredicted RBP5.1□□□□□ -1.59
SCN1A-203ENST00000409050 C17orf98A8MV24 154 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 NAPSAO96009 420 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 CECR9P0C854 216 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 ATP5J2P56134 94 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 GAGE2BQ13066 116 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 LAGE3Q14657 143 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 KIAA1644Q3SXP7 199 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 GAGE2EQ4V326 116 aa5.1□□□□□ -1.59
SCN1A-203ENST00000409050 TPRX1Q8N7U7 411 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 85.5 ms