RNA–Protein interactions for RNA: ENST00000397053.6

UPF2-203, Transcript of UPF2, regulator of nonsense mediated mRNA decay, humanhuman

APPRIS P1 TSL 5 BASIC

Gene UPF2, Length 5,369 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF2-203ENST00000397053 ZNF818PQ6ZRF7 136 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 C1QL2Q7Z5L3 287 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 PCNX2A6NKB5 2137 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 PAPPAQ13219 1627 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TRBV5-3A0A0A0MS03 114 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 CGB7P0DN87 165 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 ZP1P60852 638 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 FAM169BQ8N8A8 192 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 ST20Q9HBF5 79 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TRAV12-3A0A0B4J271 114 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TRAV21A0A0B4J279 112 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 ZNF708P17019 499 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 EFNB1P98172 346 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 POC1AQ8NBT0 407 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 NPCDR1Q9BY65 106 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TMEM133Q9H2Q1 129 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 FAM206AQ9NX38 181 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 TOGARAM1Q9Y4F4 1720 aa6.06□□□□□ -1.44
UPF2-203ENST00000397053 CKAP5Q14008 2032 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 EREGO14944 169 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 TRGC2P03986 189 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 OR9G9P0C7N8 305 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 RPL35AP18077 110 aaKnown RBP6.05□□□□□ -1.44
UPF2-203ENST00000397053 IGHV1-2P23083 117 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 LINC00158P58513 81 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 FAM89BQ8N5H3 189 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 CACNG8Q8WXS5 425 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 MIXL1Q9H2W2 232 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 SEPSECSQ9HD40 501 aaKnown RBP6.05□□□□□ -1.44
UPF2-203ENST00000397053 PLSCR2Q9NRY7 297 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 CASP8AP2Q9UKL3 1982 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 SOD3P08294 240 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 PKIAP61925 76 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 C1QTNF4Q9BXJ3 329 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 TRBV5-5A0A0J9YX44 114 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 RPL32P62910 135 aaKnown RBP6.05□□□□□ -1.44
UPF2-203ENST00000397053 PAX8Q06710 450 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 GFI1BQ5VTD9 330 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 RFLNBQ8N5W9 214 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 OR1P1Q8NH06 330 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 SIRT4Q9Y6E7 314 aaPredicted RBP6.05□□□□□ -1.44
UPF2-203ENST00000397053 CHCHD2Q9Y6H1 151 aaPredicted RBP6.05□□□□□ -1.44
UPF2-203ENST00000397053 TGIF2-C20orf24A0A0A6YYL0 155 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 CTSBP07858 339 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 IGFBP2P18065 325 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 Q6AWC8 147 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 RNF182Q8N6D2 247 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 APCDD1LQ8NCL9 501 aa6.05□□□□□ -1.44
UPF2-203ENST00000397053 RGPD8O14715 1765 aaPredicted RBP6.05□□□□□ -1.44
UPF2-203ENST00000397053 GGTLC3B5MD39 225 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 H0YL77 283 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 SMIM6P0DI80 62 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 FAM90A1Q86YD7 464 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 FER1L6Q2WGJ9 1857 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 TRAV41A0A0B4J266 112 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 APOHP02749 345 aaPredicted RBP6.04□□□□□ -1.44
UPF2-203ENST00000397053 UMODP07911 640 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 CD28P10747 220 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 RPL36AP83881 106 aaKnown RBP6.04□□□□□ -1.44
UPF2-203ENST00000397053 ATOH7Q8N100 152 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 OR11H7Q8NGC8 314 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 RPL36ALQ969Q0 106 aaKnown RBP6.04□□□□□ -1.44
UPF2-203ENST00000397053 RNF125Q96EQ8 232 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 PTPN13Q12923 2485 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 DLG5Q8TDM6 1919 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 H3BUX3 64 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 TIMM23O14925 209 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 PRSS23O95084 383 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 HLA-DQB1P01920 261 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 CGB3P0DN86 165 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 PLNP26678 52 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 ORMDL3Q8N138 153 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 WFDC12Q8WWY7 111 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 RNF166Q96A37 237 aaPredicted RBP6.04□□□□□ -1.44
UPF2-203ENST00000397053 MRPS18AQ9NVS2 196 aaKnown RBP6.04□□□□□ -1.44
UPF2-203ENST00000397053 TRGV1A0A0A0MS02 117 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 RAMP1O60894 148 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 CGAP01215 116 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 IFI6P09912 130 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 ZNF79Q15937 498 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 ZNF672Q499Z4 452 aaPredicted RBP6.04□□□□□ -1.44
UPF2-203ENST00000397053 DTX1Q86Y01 620 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 WDYHV1Q96HA8 205 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 ANAPC10Q9UM13 185 aa6.04□□□□□ -1.44
UPF2-203ENST00000397053 INS-IGF2F8WCM5 200 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 PLA2G10O15496 165 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 INSP01308 110 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 LIMS1P48059 325 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 PVRIGQ6DKI7 326 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 KLHL30-AS1Q8NEE0 82 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 PMCHL2Q9BQD1 86 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 CYSLTR1Q9Y271 337 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 V9GYH0 126 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 TRBV9A0A0B4J1U6 114 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 A0A1B0GWB2 263 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 NPIPB13A6NJU9 1138 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 C17orf98A8MV24 154 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 F12P00748 615 aaPredicted RBP6.03□□□□□ -1.44
UPF2-203ENST00000397053 TMEM219Q86XT9 240 aa6.03□□□□□ -1.44
UPF2-203ENST00000397053 GGACTQ9BVM4 153 aa6.03□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms