RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 OR8G2PQ6IF36 304 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 CYP2G1PQ6ZSU1 146 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 C11orf42Q8N5U0 333 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 C8orf46Q8TAG6 207 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 RPUSD4Q96CM3 377 aaKnown RBP10.12□□□□□ -0.79
CIITA-202ENST00000381835 C5orf30Q96GV9 206 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 PARD6GQ9BYG4 376 aaPredicted RBP10.12□□□□□ -0.79
CIITA-202ENST00000381835 ZNRD1Q9P1U0 126 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 IGHV4-30-2A0A087WSY4 118 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 NDUFS8O00217 210 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 PFN1P07737 140 aaKnown RBP10.12□□□□□ -0.79
CIITA-202ENST00000381835 PRB3Q04118 309 aaPredicted RBP10.12□□□□□ -0.79
CIITA-202ENST00000381835 ZNF585BQ52M93 769 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 RPP25LQ8N5L8 163 aaKnown RBP10.12□□□□□ -0.79
CIITA-202ENST00000381835 ZNF439Q8NDP4 499 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 LY6G5BQ8NDX9 201 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 OR5B12Q96R08 314 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 IFI27L2Q9H2X8 130 aa10.12□□□□□ -0.79
CIITA-202ENST00000381835 C17orf98A8MV24 154 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 PPP5D1E7EU14 171 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 HMGB3O15347 200 aaKnown RBP10.11□□□□□ -0.79
CIITA-202ENST00000381835 KBTBD11O94819 623 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 PAX1P15863 534 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 GALR1P47211 349 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 PSMB3P49720 205 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 RAB7AP51149 207 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 TAS2R60P59551 318 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 ARF6P62330 175 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 JOSD1Q15040 202 aaPredicted RBP10.11□□□□□ -0.79
CIITA-202ENST00000381835 RPL39P5Q59GN2 51 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 LYG1Q8N1E2 194 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 OR1P1Q8NH06 330 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 ABCA2Q9BZC7 2435 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 IGHV4-61A0A0C4DH41 118 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 XKRY2A2RUG3 117 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 H7BYZ3 331 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 IGKV1D-33P01593 117 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 IGKV1-33P01594 117 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 LINC00205P59089 165 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 RPL23P62829 140 aaKnown RBP10.11□□□□□ -0.79
CIITA-202ENST00000381835 PMS2P11Q13670 270 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 COTL1Q14019 142 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 SLC25A48Q6ZT89 311 aaKnown RBP10.11□□□□□ -0.79
CIITA-202ENST00000381835 ZBTB34Q8NCN2 500 aa10.11□□□□□ -0.79
CIITA-202ENST00000381835 VWC2LB2RUY7 222 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 ITGB1BP1O14713 200 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 PROP1O75360 226 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 AMBPP02760 352 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 GZMBP10144 247 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 FGF7P21781 194 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 RPL30P62888 115 aaKnown RBP10.1□□□□□ -0.79
CIITA-202ENST00000381835 CLEC12BQ2HXU8 276 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 RNASEH2CQ8TDP1 164 aaKnown RBP10.1□□□□□ -0.79
CIITA-202ENST00000381835 PYGO2Q9BRQ0 406 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 LPAR2Q9HBW0 351 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 TIMM9Q9Y5J7 89 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 SAA2-SAA4A0A096LPE2 208 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 M0R1X1 148 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 RAB29O14966 203 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 SAA2P0DJI9 122 aaPredicted RBP10.1□□□□□ -0.79
CIITA-202ENST00000381835 RAB4AP20338 218 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 ZNF66Q6ZN08 573 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 C1orf229Q6ZS94 237 aaPredicted RBP10.1□□□□□ -0.79
CIITA-202ENST00000381835 ABHD12Q8N2K0 398 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 OR51G1Q8NGK1 321 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 TMEM133Q9H2Q1 129 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 PARLQ9H300 379 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 SLC25A22Q9H936 323 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 HECTD1Q9ULT8 2610 aa10.1□□□□□ -0.79
CIITA-202ENST00000381835 RNF212BA8MTL3 300 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 FAM90A26D6RGX4 464 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 TMEM250H0YL14 139 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 DSCR9P59020 149 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 DEFB113Q30KQ7 82 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 ACSM6Q6P461 480 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 TMEM14EPQ6UXP3 125 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 OR4F5Q8NH21 305 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 FAM216AQ8WUB2 273 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 OR4F4Q96R69 305 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 PCGF1Q9BSM1 259 aa10.09□□□□□ -0.79
CIITA-202ENST00000381835 A0A1W2PPQ1 181 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 LINC00473A8K010 186 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 J3QR06 171 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 ENSAO43768 121 aaKnown RBP10.08□□□□□ -0.8
CIITA-202ENST00000381835 TNFRSF9Q07011 255 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 CATR1Q13166 79 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 EIF4EBP1Q13541 118 aaPredicted RBP10.08□□□□□ -0.8
CIITA-202ENST00000381835 MSMO1Q15800 293 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 Q8N7P7 452 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 OR10G9Q8NGN4 311 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 OR10G7Q8NGN6 311 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 OR10X1Q8NGY0 326 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 OR9G1Q8NH87 305 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 HSD17B10Q99714 261 aaKnown RBP10.08□□□□□ -0.8
CIITA-202ENST00000381835 ACTR3CQ9C0K3 210 aaPredicted RBP10.08□□□□□ -0.8
CIITA-202ENST00000381835 ITPR2Q14571 2701 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 CTXND1A0A1B0GTU2 59 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 ZNF705GA8MUZ8 300 aaPredicted RBP10.08□□□□□ -0.8
CIITA-202ENST00000381835 HRASP01112 189 aa10.08□□□□□ -0.8
CIITA-202ENST00000381835 COX7A1P24310 79 aa10.08□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms