RNA–Protein interactions for RNA: ENST00000372407.4

PTPRF-203, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 2

Gene PTPRF, Length 4,600 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-203ENST00000372407 IGKV3D-15A0A087WSY6 115 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 A0A087WV48 116 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 SCO2A0A1W2PP80 73 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 C7orf71A4D174 169 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 IGKV3-15P01624 115 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 MPZP25189 248 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 APOBEC3AP31941 199 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-203ENST00000372407 MEF2CQ06413 473 aaPredicted RBP9.62□□□□□ -0.87
PTPRF-203ENST00000372407 FAM27E3Q08E93 113 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 ZNF414Q96IQ9 312 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 FBXL15Q9H469 300 aa9.62□□□□□ -0.87
PTPRF-203ENST00000372407 MUC6Q6W4X9 2439 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 IGKV1D-13A0A0B4J2D9 117 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 FOXI3A8MTJ6 420 aaPredicted RBP9.61□□□□□ -0.87
PTPRF-203ENST00000372407 IGKV1-13P0DP09 117 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 TNFSF10P50591 281 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 LEMD1Q68G75 181 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 FAM90A1Q86YD7 464 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 OR52E5Q8NH55 327 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 EEF1AKMT3Q96AZ1 226 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 GSN-AS1Q9NRJ2 163 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 TBL2Q9Y4P3 447 aaKnown RBP9.61□□□□□ -0.87
PTPRF-203ENST00000372407 LOC102723996A0A087X1L8 192 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 IGHV2OR16-5A0A0B4J2B6 119 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 A0A1B0GV90 55 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 FGF16O43320 207 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 RPL23P62829 140 aaKnown RBP9.61□□□□□ -0.87
PTPRF-203ENST00000372407 FAM201AQ5SY85 155 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 IGLV3-32A0A0A0MS00 114 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 IQCF6A8MYZ5 107 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 FOXH1O75593 365 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 FLVCR1-AS1Q8TAF5 88 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 IMMP2LQ96T52 175 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 F11RQ9Y624 299 aaKnown RBP9.61□□□□□ -0.87
PTPRF-203ENST00000372407 PI4KAP42356 2102 aa9.61□□□□□ -0.87
PTPRF-203ENST00000372407 A0A0G2JMM0 328 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 A0A1W2PPB8 328 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 A0A1W2PRS3 328 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 A1L4Q6 167 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 PRR19A6NJB7 356 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 KIR3DP1A8MWS1 328 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 LGALS3P17931 250 aaKnown RBP9.6□□□□□ -0.87
PTPRF-203ENST00000372407 DLX6P56179 175 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 LRTM2Q8N967 370 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 RNASEH2CQ8TDP1 164 aaKnown RBP9.6□□□□□ -0.87
PTPRF-203ENST00000372407 ZNF319Q9P2F9 582 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 FOXD3Q9UJU5 478 aaPredicted RBP9.6□□□□□ -0.87
PTPRF-203ENST00000372407 IGHV3OR16-13A0A075B7E8 117 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 IGHV3-74A0A0B4J1X5 117 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 PLPPR1Q8TBJ4 325 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 SOX21Q9Y651 276 aaPredicted RBP9.6□□□□□ -0.87
PTPRF-203ENST00000372407 MED13LQ71F56 2210 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 TANC1Q9C0D5 1861 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 CIRBPQ14011 172 aaKnown RBP9.6□□□□□ -0.87
PTPRF-203ENST00000372407 FAM159AQ6UWV7 190 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 C18orf12Q96KH6 178 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 PRDM13Q9H4Q3 707 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 KIAA2026Q5HYC2 2103 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 MTCL1Q9Y4B5 1905 aaKnown RBP9.6□□□□□ -0.87
PTPRF-203ENST00000372407 PCNX1Q96RV3 2341 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 UMODP07911 640 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 JOSD1Q15040 202 aaPredicted RBP9.6□□□□□ -0.87
PTPRF-203ENST00000372407 RRN3P1Q2M238 152 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 WNT10AQ9GZT5 417 aa9.6□□□□□ -0.87
PTPRF-203ENST00000372407 TRAV24A0A0B4J272 114 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 LOC105371267A0A1B0GV96 52 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 PRSS8Q16651 343 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 PRELID3AQ96N28 172 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 IGHV1-2P23083 117 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 PSMG4Q5JS54 123 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 TEX29Q8N6K0 151 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 C14orf144Q96I85 54 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 RAX2Q96IS3 184 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 C21orf62Q9NYP8 219 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 PEF1Q9UBV8 284 aaKnown RBP9.59□□□□□ -0.87
PTPRF-203ENST00000372407 LINC00312Q9Y6C7 94 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 ATP5J2P56134 94 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 HIST1H1AQ02539 215 aaPredicted RBP9.59□□□□□ -0.87
PTPRF-203ENST00000372407 FAM74A4Q5TZK3 123 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 Q6AWC8 147 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 TEX45Q8NA69 505 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 GFI1Q99684 422 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 YPEL1O60688 119 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 LY6EQ16553 131 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 MIR17HGQ75NE6 70 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 YPEL2Q96QA6 119 aa9.59□□□□□ -0.87
PTPRF-203ENST00000372407 CCL20P78556 96 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 CIARTQ8N365 385 aaPredicted RBP9.58□□□□□ -0.88
PTPRF-203ENST00000372407 ARL6IP6Q8N6S5 226 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 DOCK7Q96N67 2140 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 IGHV3OR16-12A0A075B7B8 117 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 TRAV8-6A0A0B4J262 113 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 GATA2P23769 480 aaPredicted RBP9.58□□□□□ -0.88
PTPRF-203ENST00000372407 WDR82Q6UXN9 313 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 LYZL4Q96KX0 146 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 GEMIN7Q9H840 131 aaKnown RBP9.58□□□□□ -0.88
PTPRF-203ENST00000372407 CHODLQ9H9P2 273 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 MPDZO75970 2070 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 ATP5LO75964 103 aa9.58□□□□□ -0.88
PTPRF-203ENST00000372407 SNRPD3P62318 126 aaKnown RBP9.58□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.4 ms