RNA–Protein interactions for RNA: ENST00000341472.9

SYNE2-201, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best) BASIC

Gene SYNE2, Length 1,132 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-201ENST00000341472 NEURL2Q9BR09 285 aa15.22■□□□□ 0.03
SYNE2-201ENST00000341472 PALMDQ9NP74 551 aa15.22■□□□□ 0.03
SYNE2-201ENST00000341472 GSTZ1O43708 216 aaPredicted RBP15.21■□□□□ 0.03
SYNE2-201ENST00000341472 PGAM2P15259 253 aa15.21■□□□□ 0.03
SYNE2-201ENST00000341472 PPP5CP53041 499 aa15.21■□□□□ 0.03
SYNE2-201ENST00000341472 RNASE10Q5GAN6 216 aaKnown RBP15.21■□□□□ 0.03
SYNE2-201ENST00000341472 OR1L6Q8NGR2 347 aa15.21■□□□□ 0.03
SYNE2-201ENST00000341472 MTFP1Q9UDX5 166 aa15.21■□□□□ 0.03
SYNE2-201ENST00000341472 F11RQ9Y624 299 aaKnown RBP15.21■□□□□ 0.03
SYNE2-201ENST00000341472 TMEM213A2RRL7 107 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 CD3DP04234 171 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 SSBP1Q04837 148 aaKnown RBP15.2■□□□□ 0.02
SYNE2-201ENST00000341472 ZNF79Q15937 498 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 TM4SF20Q53R12 229 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 ZNF57Q68EA5 555 aaPredicted RBP15.2■□□□□ 0.02
SYNE2-201ENST00000341472 H2BFWTQ7Z2G1 175 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 OR4A16Q8NH70 328 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 MUC7Q8TAX7 377 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 SMIM4Q8WVI0 70 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 CACNG8Q8WXS5 425 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 SRRQ9GZT4 340 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 TMEM14BQ9NUH8 114 aa15.2■□□□□ 0.02
SYNE2-201ENST00000341472 IGHV3-35A0A0C4DH35 117 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 DBX1A6NMT0 343 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 A8MWP6 167 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 CD7P09564 240 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 TBPP20226 339 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 UNQ9165/PRO28630Q6UXU0 137 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 ARRDC1Q8N5I2 433 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 MARC2Q969Z3 335 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 WDR89Q96FK6 387 aaPredicted RBP15.19■□□□□ 0.02
SYNE2-201ENST00000341472 SEC22AQ96IW7 307 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 SPATA25Q9BR10 227 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 CCDC32Q9BV29 185 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 PLEKHA3Q9HB20 300 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 UFC1Q9Y3C8 167 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 SELENOKQ9Y6D0 94 aa15.19■□□□□ 0.02
SYNE2-201ENST00000341472 C15orf61A6NNL5 157 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 TGOLN2O43493 480 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 IGKV1-39P01597 117 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 IGKV1D-39P04432 117 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 MFAP2P55001 183 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 ELLP55199 621 aaPredicted RBP15.18■□□□□ 0.02
SYNE2-201ENST00000341472 RND3P61587 244 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 LHFPL1Q86WI0 220 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 TMEM229BQ8NBD8 167 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 SCARB1Q8WTV0 552 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 ZNF486Q96H40 463 aaPredicted RBP15.18■□□□□ 0.02
SYNE2-201ENST00000341472 CITED4Q96RK1 184 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 C21orf62Q9NYP8 219 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 MLXQ9UH92 298 aa15.18■□□□□ 0.02
SYNE2-201ENST00000341472 IGHV3-21A0A0B4J1V1 117 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 OR2T8A6NH00 312 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 OR11H12B2RN74 326 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 C8orf88P0DMB2 117 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 PI3P19957 117 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 DEFB125Q8N687 156 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 TERB2Q8NHR7 220 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 MRGPRFQ96AM1 343 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 ATP6V0BQ99437 205 aa15.17■□□□□ 0.02
SYNE2-201ENST00000341472 ZNF436Q9C0F3 470 aaPredicted RBP15.17■□□□□ 0.02
SYNE2-201ENST00000341472 MRPL27Q9P0M9 148 aaKnown RBP15.17■□□□□ 0.02
SYNE2-201ENST00000341472 PIGPP57054 158 aa15.16■□□□□ 0.02
SYNE2-201ENST00000341472 TAS2R19P59542 299 aa15.16■□□□□ 0.02
SYNE2-201ENST00000341472 HSPE1P61604 102 aaKnown RBP15.16■□□□□ 0.02
SYNE2-201ENST00000341472 SPSB3Q6PJ21 355 aa15.16■□□□□ 0.02
SYNE2-201ENST00000341472 LINC00322Q6ZN03 302 aaPredicted RBP15.16■□□□□ 0.02
SYNE2-201ENST00000341472 SLC16A13Q7RTY0 426 aa15.16■□□□□ 0.02
SYNE2-201ENST00000341472 TMEM61Q8N0U2 210 aa15.16■□□□□ 0.02
SYNE2-201ENST00000341472 OR1P1Q8NH06 330 aa15.16■□□□□ 0.02
SYNE2-201ENST00000341472 ZFAND1Q8TCF1 268 aa15.16■□□□□ 0.02
SYNE2-201ENST00000341472 BSCL2Q96G97 398 aaPredicted RBP15.16■□□□□ 0.02
SYNE2-201ENST00000341472 TRAV25A0A0B4J276 109 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 K7EIM0 57 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 RAB3DO95716 219 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 CD74P04233 296 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 LYL1P12980 280 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 ANKRD55Q3KP44 614 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 BTNL8Q6UX41 500 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 RBPMS2Q6ZRY4 209 aaKnown RBP15.15■□□□□ 0.02
SYNE2-201ENST00000341472 OR2C3Q8N628 320 aa15.15■□□□□ 0.02
SYNE2-201ENST00000341472 ATG12O94817 140 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 SCAF4O95104 1147 aaKnown RBP15.14■□□□□ 0.01
SYNE2-201ENST00000341472 INPP1P49441 399 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 AP3S2P59780 193 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 ERHP84090 104 aaKnown RBP15.14■□□□□ 0.01
SYNE2-201ENST00000341472 Q56UQ5 140 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 TRIQKQ629K1 86 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 STEAP1BQ6NZ63 245 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 UBAC2Q8NBM4 344 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 OR4D10Q8NGI6 311 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 OR52B4Q8NGK2 314 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 TMEM190Q8WZ59 177 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 SDHCQ99643 169 aaPredicted RBP15.14■□□□□ 0.01
SYNE2-201ENST00000341472 SRD5A3Q9H8P0 318 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 GAR1Q9NY12 217 aaKnown RBP15.14■□□□□ 0.01
SYNE2-201ENST00000341472 COPZ2Q9P299 210 aa15.14■□□□□ 0.01
SYNE2-201ENST00000341472 C3orf85A0A1B0GTC6 90 aa15.13■□□□□ 0.01
SYNE2-201ENST00000341472 RBMY1BA6NDE4 496 aaKnown RBP15.13■□□□□ 0.01
SYNE2-201ENST00000341472 RBMY1EA6NEQ0 496 aaKnown RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms