RNA–Protein interactions for RNA: ENST00000332797.10

CCDC28A-201, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,496 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-201ENST00000332797 LINC01619G3V211 115 aa12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 NDUFB8O95169 186 aa12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 HLA-AP01891 365 aaKnown RBP12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 OR8U8P0C7N1 319 aa12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 C15orf32Q32M92 178 aa12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 MZT2BQ6NZ67 158 aa12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 WFDC9Q8NEX5 89 aa12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 CTNNBIP1Q9NSA3 81 aaPredicted RBP12.27□□□□□ -0.44
CCDC28A-201ENST00000332797 PIGBOS1A0A0B4J2F0 54 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 FAM240BA0A1B0GVZ2 78 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 C9orf170A2RU37 121 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 CYB5BO43169 146 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 TCRBP04435 133 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 HSPB1P04792 205 aaKnown RBP12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 OR4E1P0C645 316 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 SULT1A3P0DMM9 295 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 SULT1A4P0DMN0 295 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 HOXA1P49639 335 aaPredicted RBP12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 IFITM3Q01628 133 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 C4orf46Q504U0 113 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 NMSQ5H8A3 153 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 ZNF343Q6P1L6 599 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 DMRT1Q9Y5R6 373 aa12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 F11RQ9Y624 299 aaKnown RBP12.27□□□□□ -0.45
CCDC28A-201ENST00000332797 TRAV6A0A075B6T7 132 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 DUXBA0A1W2PPF3 345 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 NXPH3O95157 252 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 IGLL1P15814 213 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 SLURP1P55000 103 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 DHRS2Q13268 280 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 KLK9Q2XQG4 91 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 SLC25A24Q6NUK1 477 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 LYG2Q86SG7 212 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 OR2C3Q8N628 320 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 LRTM2Q8N967 370 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 RANGRFQ9HD47 186 aaPredicted RBP12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 PALMDQ9NP74 551 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 ENY2Q9NPA8 101 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 NUDT15Q9NV35 164 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 PEF1Q9UBV8 284 aaKnown RBP12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 KLK9Q9UKQ9 250 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 S4R3C0 116 aa12.26□□□□□ -0.45
CCDC28A-201ENST00000332797 G3V4G9 280 aa12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 TRBV12-3P01733 135 aa12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 IGHV3-23P01764 117 aa12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 MFAP2P55001 183 aa12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 SPCS3P61009 180 aa12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 ERHP84090 104 aaKnown RBP12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 C1QL4Q86Z23 238 aa12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 RCC1LQ96I51 464 aaKnown RBP12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 THYN1Q9P016 225 aa12.25□□□□□ -0.45
CCDC28A-201ENST00000332797 MFSD2BA6NFX1 497 aa12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 HOXD3P31249 432 aaPredicted RBP12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 DCTN2Q13561 401 aaKnown RBP12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 SMCO1Q147U7 214 aa12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 AARDQ4LEZ3 155 aa12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 OXLD1Q5BKU9 147 aa12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 OR52E5Q8NH55 327 aa12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 ENKURQ8TC29 256 aa12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 EEF1AKMT3Q96AZ1 226 aa12.24□□□□□ -0.45
CCDC28A-201ENST00000332797 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 CEBPZOSA8MTT3 80 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 HOXB5P09067 269 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 H2AFB2P0C5Z0 115 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 SAMD5Q5TGI4 173 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 ZNF114Q8NC26 417 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 OR52B4Q8NGK2 314 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 OR1L6Q8NGR2 347 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 OR1P1Q8NH06 330 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 OR1S1Q8NH92 325 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 COQ8AQ8NI60 647 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 DCUN1D4Q92564 292 aa12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 DLX4Q92988 240 aaPredicted RBP12.23□□□□□ -0.45
CCDC28A-201ENST00000332797 IGHV3-21A0A0B4J1V1 117 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 A0A1B0GU03 582 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 DUS4LO95620 317 aaKnown RBP12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 ZP3P21754 424 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 SNCAP37840 140 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 MISP3Q96FF7 219 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 CXorf58Q96LI9 332 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 CCDC140Q96MF4 163 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 MCRIP2Q9BUT9 160 aaKnown RBP12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 TMED3Q9Y3Q3 217 aa12.22□□□□□ -0.45
CCDC28A-201ENST00000332797 PPP5D1E7EU14 171 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 INS-IGF2F8WCM5 200 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 BMPR1BO00238 502 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 OVOL1O14753 267 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 DEFA1P59665 94 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 DEFA3P59666 94 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 PDLIM3Q53GG5 364 aaPredicted RBP12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 FAM209BQ5JX69 171 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 GGNBP1Q5YKI7 109 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 CLEC19AQ6UXS0 136 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 HEYLQ9NQ87 328 aaPredicted RBP12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 CACFD1Q9UGQ2 172 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 MEGF8Q7Z7M0 2845 aa12.21□□□□□ -0.45
CCDC28A-201ENST00000332797 TRBV7-1A0A0A6YYK4 115 aa12.21□□□□□ -0.46
CCDC28A-201ENST00000332797 ADAP1O75689 374 aa12.21□□□□□ -0.46
CCDC28A-201ENST00000332797 TNFRSF9Q07011 255 aa12.21□□□□□ -0.46
CCDC28A-201ENST00000332797 RPEL1Q2QD12 228 aa12.21□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms