RNA–Protein interactions for RNA: ENST00000329399.6

PDLIM1-201, Transcript of PDZ and LIM domain 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM1, Length 1,452 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM1-201ENST00000329399 SMIM3Q9BZL3 60 aa13.12□□□□□ -0.31
PDLIM1-201ENST00000329399 COMMD5Q9GZQ3 224 aa13.12□□□□□ -0.31
PDLIM1-201ENST00000329399 A0A1W2PN81 502 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 TSPAN9O75954 239 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 FBP1P09467 338 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 CHRNA7P36544 502 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 SULT1A2P50226 295 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 F2RL1P55085 397 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 OR2B8PP59922 312 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 MMD2Q8IY49 270 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 SCGB1C1Q8TD33 95 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 WFDC1Q9HC57 220 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 PFDN2Q9UHV9 154 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 VWFP04275 2813 aa13.11□□□□□ -0.31
PDLIM1-201ENST00000329399 A0A1W2PPI3 338 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 IGLV2-23P01705 113 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 HOXA1P49639 335 aaPredicted RBP13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 COMPP49747 757 aaPredicted RBP13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 DIAPH2-AS1Q14236 149 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 AWAT1Q58HT5 328 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 LILRB2Q8N423 598 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 MEGF9Q9H1U4 602 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 PLEKHA3Q9HB20 300 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 FBN3Q75N90 2809 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 FNDC10F2Z333 226 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 IFNA10P01566 189 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 METTL15P1P0C7V9 234 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 SLC38A11Q08AI6 406 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 CLINT1Q14677 625 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 DPPA3Q6W0C5 159 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 HSD17B13Q7Z5P4 300 aaPredicted RBP13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 TMEM86BQ8N661 226 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 TMEM217Q8N7C4 229 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 TMED6Q8WW62 240 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 SSX3Q99909 188 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 SRSF8Q9BRL6 282 aaKnown RBP13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 PSMG3Q9BT73 122 aaPredicted RBP13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 TMEM147Q9BVK8 224 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 C1RLQ9NZP8 487 aa13.1□□□□□ -0.31
PDLIM1-201ENST00000329399 CMYA5Q8N3K9 4069 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 TRAV3A0A0B4J244 114 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 TEX50A0A1B0GTY4 177 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 H3BP45 60 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 H3BUX3 64 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 MDKP21741 143 aaPredicted RBP13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 ERHP84090 104 aaKnown RBP13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 SERF2P84101 59 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 TMEM267Q0VDI3 215 aaPredicted RBP13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 VWC2Q2TAL6 325 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 SLC25A24Q6NUK1 477 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 THNSL2Q86YJ6 484 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 BSCL2Q96G97 398 aaPredicted RBP13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 NDUFA4L2Q9NRX3 87 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 TIMM9Q9Y5J7 89 aa13.09□□□□□ -0.31
PDLIM1-201ENST00000329399 PMS2P5A8MQ11 134 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 MPDU1O75352 247 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 MOSP00540 346 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 CRYGBP07316 175 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 BRS3P32247 399 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 SUB1P53999 127 aaKnown RBP eCLIP13.08□□□□□ -0.322e-7■□□□□ 10.4
PDLIM1-201ENST00000329399 EBI3Q14213 229 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 SSX2Q16385 188 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 LY6EQ16553 131 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 LRRC75BQ2VPJ9 315 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 FBLN7Q53RD9 439 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 C12orf54Q6X4T0 127 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 SLC7A5P1Q8MH63 180 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 OR2T10Q8NGZ9 312 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 OR4C12Q96R67 309 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 UQCC1Q9NVA1 299 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 HILPDAQ9Y5L2 63 aa13.08□□□□□ -0.32
PDLIM1-201ENST00000329399 MGAM2Q2M2H8 2515 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 C15orf62A8K5M9 175 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 TIMM23O14925 209 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 ACTL6BO94805 426 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 NPY1RP25929 384 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 DLK1P80370 383 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 PSG5Q15238 335 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 C2orf83Q53S99 150 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 CENPVQ7Z7K6 275 aaPredicted RBP13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 EIF4E3Q8N5X7 224 aaKnown RBP13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 SLC24A4Q8NFF2 622 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 NPBQ8NG41 125 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 CFHR4Q92496 578 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 PARP11Q9NR21 331 aa13.07□□□□□ -0.32
PDLIM1-201ENST00000329399 SNRNP70P08621 437 aaKnown RBP13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 PRSS8Q16651 343 aa13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 ETV3LQ6ZN32 361 aa13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 PPP1R27Q86WC6 154 aa13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 COMMD1Q8N668 190 aa13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 KIAA1456Q9P272 454 aa13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 VPREB3Q9UKI3 123 aa13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 SIGLEC9Q9Y336 463 aa13.06□□□□□ -0.32
PDLIM1-201ENST00000329399 ZNF705EA8MWA4 302 aaPredicted RBP13.05□□□□□ -0.32
PDLIM1-201ENST00000329399 SLC25A17O43808 307 aa13.05□□□□□ -0.32
PDLIM1-201ENST00000329399 FBXO24O75426 580 aa13.05□□□□□ -0.32
PDLIM1-201ENST00000329399 FAM106CPP0CH98 169 aa13.05□□□□□ -0.32
PDLIM1-201ENST00000329399 ATP6V0CP27449 155 aa13.05□□□□□ -0.32
PDLIM1-201ENST00000329399 SNCAP37840 140 aa13.05□□□□□ -0.32
PDLIM1-201ENST00000329399 BSXQ3C1V8 233 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms