RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 FAM90A26D6RGX4 464 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 CLDN34H7C241 214 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 MED6O75586 246 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 CST7O76096 145 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 METTL15P1P0C7V9 234 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 OR8G2PQ6IF36 304 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 SLC24A4Q8NFF2 622 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 OR4C12Q96R67 309 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 C2CD3Q4AC94 2353 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 TRAV41A0A0B4J266 112 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 SOX15O60248 233 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 PET100P0DJ07 73 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 PVALBP20472 110 aaPredicted RBP12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 ERHP84090 104 aaKnown RBP12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 PRSS54Q6PEW0 395 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 ZC4H2Q9NQZ6 224 aa12.1□□□□□ -0.47
PDLIM5-202ENST00000318007 FBN1P35555 2871 aaKnown RBP12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 AP4M1O00189 453 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 FGL1Q08830 312 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 ZFP69Q49AA0 526 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 TCTE3Q8IZS6 198 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 STPG2Q8N412 459 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 C11orf44Q8N8P7 122 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 OR2T6Q8NHC8 308 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 TMEM170AQ8WVE7 144 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 MISP3Q96FF7 219 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 P2RX4Q99571 388 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 WNT10AQ9GZT5 417 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 IFNA4P05014 189 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 MFAP2P55001 183 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 RPL23AP62750 156 aaKnown RBP12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 ZNF546Q86UE3 836 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 RAB40CQ96S21 281 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 SMIM3Q9BZL3 60 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 DMRT1Q9Y5R6 373 aa12.09□□□□□ -0.47
PDLIM5-202ENST00000318007 IGSF23A1L1A6 192 aa12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 E5RGE8 158 aa12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 NPY1RP25929 384 aa12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 NHLH2Q02577 135 aa12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 PDLIM3Q53GG5 364 aaPredicted RBP12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 SLC25A24Q6NUK1 477 aa12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 OR2C3Q8N628 320 aa12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 BSCL2Q96G97 398 aaPredicted RBP12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 ATRQ13535 2644 aa12.08□□□□□ -0.48
PDLIM5-202ENST00000318007 C15orf62A8K5M9 175 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 FBXO24O75426 580 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 IGHV3-23P01764 117 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 OR8U8P0C7N1 319 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 RNASE2P10153 161 aaKnown RBP12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 MLANAQ16655 118 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 CIB3Q96Q77 187 aaPredicted RBP12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 C11orf1Q9H5F2 150 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 LYRM2Q9NU23 88 aaPredicted RBP12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 SERTAD4Q9NUC0 356 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 STRAPQ9Y3F4 350 aaKnown RBP12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 OR2J3O76001 311 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 IGF1P05019 195 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 CTRB1P17538 263 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 MDKP21741 143 aaPredicted RBP12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 EIF2B2P49770 351 aaKnown RBP12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 CTRB2Q6GPI1 263 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 ZFP57Q9NU63 452 aa12.07□□□□□ -0.48
PDLIM5-202ENST00000318007 HNRNPCP07910 306 aaKnown RBP eCLIP12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 PF4V1P10720 104 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 RPL12P30050 165 aaKnown RBP12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 HTR2BP41595 481 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 AKIRIN2Q53H80 203 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 CENPVQ7Z7K6 275 aaPredicted RBP12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 PRIMA1Q86XR5 153 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 TMEM252Q8N6L7 170 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 ASB13Q8WXK3 278 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 SMIM8Q96KF7 97 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 KLK15Q9H2R5 256 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 F11RQ9Y624 299 aaKnown RBP12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 U3KQ87 197 aa12.06□□□□□ -0.48
PDLIM5-202ENST00000318007 C1QBP02746 253 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 HKR1P10072 659 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 OPRK1P41145 380 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 EWSR1Q01844 656 aaKnown RBP eCLIP12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 ARL16Q0P5N6 197 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 CLINT1Q14677 625 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 ETV3LQ6ZN32 361 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 INO80EQ8NBZ0 244 aaPredicted RBP12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 LINC01006Q8NI28 216 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 TENM1Q9UKZ4 2725 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 TTC9CQ8N5M4 171 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 UBAC2Q8NBM4 344 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 OR5B12Q96R08 314 aa12.05□□□□□ -0.48
PDLIM5-202ENST00000318007 SMCO3A2RU48 225 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 PSMB11A5LHX3 300 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 RNF222A6NCQ9 220 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 P2RY1P47900 373 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 TPPP2P59282 170 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 KHDC1LQ5JSQ8 128 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 NOXA1Q86UR1 476 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 HAPLN4Q86UW8 402 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 MRPL41Q8IXM3 137 aaKnown RBP12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 MFFQ9GZY8 342 aa12.04□□□□□ -0.48
PDLIM5-202ENST00000318007 CACFD1Q9UGQ2 172 aa12.04□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms