RNA–Protein interactions for RNA: ENST00000297979.9

C9orf3-202, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 1 (best) BASIC

Gene C9orf3, Length 2,820 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-202ENST00000297979 RSG1Q9BU20 258 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 BPESC1Q9GZL8 116 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 MYOD1P15172 320 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 KIR3DL3Q8N743 410 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 OR4A5Q8NH83 315 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 TAF15Q92804 592 aaKnown RBP eCLIP11.53□□□□□ -0.561e-6■■■■□ 22
C9orf3-202ENST00000297979 RPEQ96AT9 228 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 FBXO7Q9Y3I1 522 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 DOPEY1Q5JWR5 2465 aa11.53□□□□□ -0.56
C9orf3-202ENST00000297979 ENSAO43768 121 aaKnown RBP11.52□□□□□ -0.56
C9orf3-202ENST00000297979 TSPAN15O95858 294 aa11.52□□□□□ -0.56
C9orf3-202ENST00000297979 PRCDQ00LT1 54 aa11.52□□□□□ -0.56
C9orf3-202ENST00000297979 VWC2Q2TAL6 325 aa11.52□□□□□ -0.56
C9orf3-202ENST00000297979 OR11H6Q8NGC7 330 aa11.52□□□□□ -0.56
C9orf3-202ENST00000297979 OR5B3Q8NH48 314 aa11.52□□□□□ -0.56
C9orf3-202ENST00000297979 INSIG2Q9Y5U4 225 aa11.52□□□□□ -0.56
C9orf3-202ENST00000297979 IGHV3-72A0A0B4J1Y9 119 aa11.52□□□□□ -0.57
C9orf3-202ENST00000297979 IGHV1-3A0A0C4DH29 117 aa11.52□□□□□ -0.57
C9orf3-202ENST00000297979 IGLV2-23P01705 113 aa11.52□□□□□ -0.57
C9orf3-202ENST00000297979 USF1P22415 310 aaPredicted RBP11.52□□□□□ -0.57
C9orf3-202ENST00000297979 PRTN3P24158 256 aa11.52□□□□□ -0.57
C9orf3-202ENST00000297979 ZFP36P26651 326 aaKnown RBP11.52□□□□□ -0.57
C9orf3-202ENST00000297979 PDLIM4P50479 330 aa11.52□□□□□ -0.57
C9orf3-202ENST00000297979 TMEM167AQ8TBQ9 72 aa11.52□□□□□ -0.57
C9orf3-202ENST00000297979 PLEKHA3Q9HB20 300 aa11.52□□□□□ -0.57
C9orf3-202ENST00000297979 RRHO14718 337 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 DPPA3Q6W0C5 159 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 TEX50A0A1B0GTY4 177 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 LY6LH3BQJ8 138 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 LGALS7P47929 136 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 RAB11AP62491 216 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 RPL8P62917 257 aaKnown RBP11.51□□□□□ -0.57
C9orf3-202ENST00000297979 RNF151Q2KHN1 245 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 VMA21Q3ZAQ7 101 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 MOB3BQ86TA1 216 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 CLDND2Q8NHS1 167 aa11.51□□□□□ -0.57
C9orf3-202ENST00000297979 TRAV34A0A0B4J273 112 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 AGPAT2O15120 278 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 NPY1RP25929 384 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 SERF2P84101 59 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 AKR1C1Q04828 323 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 COMMD1Q8N668 190 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 TMEM170AQ8WVE7 144 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 COMMD5Q9GZQ3 224 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 TIMM9Q9Y5J7 89 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 FGF7P21781 194 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 HTR1DP28221 377 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 COMPP49747 757 aaPredicted RBP11.5□□□□□ -0.57
C9orf3-202ENST00000297979 LCN2P80188 198 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 SRSF3P84103 164 aaKnown RBP11.5□□□□□ -0.57
C9orf3-202ENST00000297979 KPTNQ9Y664 436 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 ARHGAP32A7KAX9 2087 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 C5orf52A6NGY3 159 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 SMAD7O15105 426 aaKnown RBP11.5□□□□□ -0.57
C9orf3-202ENST00000297979 PPBPP02775 128 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 LMO4P61968 165 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 KLRD1Q13241 179 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 TPTE2P1Q5T6R2 138 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 HCP5Q6MZN7 132 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 CITED2Q99967 270 aaPredicted RBP11.5□□□□□ -0.57
C9orf3-202ENST00000297979 PRDM13Q9H4Q3 707 aa11.5□□□□□ -0.57
C9orf3-202ENST00000297979 ODF3BA8MYP8 253 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 PRSS46E5RG02 174 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 SNCAP37840 140 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 SRSF1Q07955 248 aaKnown RBP eCLIP11.49□□□□□ -0.576e-7■■■□□ 17.9
C9orf3-202ENST00000297979 VMO1Q7Z5L0 202 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 CENPVQ7Z7K6 275 aaPredicted RBP11.49□□□□□ -0.57
C9orf3-202ENST00000297979 OR1L8Q8NGR8 309 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 RITA1Q96K30 269 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 ZFYVE26Q68DK2 2539 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 A0A1W2PPI3 338 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 CA2P00918 260 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 CEBPGP53567 150 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 PAX2Q02962 417 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 LFNGQ8NES3 379 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 DPF1Q92782 380 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 TMEM231Q9H6L2 316 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 DPM3Q9P2X0 92 aa11.49□□□□□ -0.57
C9orf3-202ENST00000297979 IGHV2-70DA0A0C4DH43 119 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 TMEM218A2RU14 115 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 MDKP21741 143 aaPredicted RBP11.48□□□□□ -0.57
C9orf3-202ENST00000297979 CEACAM3P40198 252 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 DLK1P80370 383 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 LDLRAD2Q5SZI1 272 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 ELOVL1Q9BW60 279 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 NDUFA4L2Q9NRX3 87 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 FAM96BQ9Y3D0 163 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 RAB2AP61019 212 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 TEX45Q8NA69 505 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 PIMREGQ9BSJ6 248 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 TMUB1Q9BVT8 246 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 NPCDR1Q9BY65 106 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 WDR83OSQ9Y284 106 aa11.48□□□□□ -0.57
C9orf3-202ENST00000297979 SNRPCP09234 159 aaKnown RBP11.47□□□□□ -0.57
C9orf3-202ENST00000297979 NBEAP1P0C6P0 100 aa11.47□□□□□ -0.57
C9orf3-202ENST00000297979 HNF4GQ14541 408 aa11.47□□□□□ -0.57
C9orf3-202ENST00000297979 TMEM41BQ5BJD5 291 aa11.47□□□□□ -0.57
C9orf3-202ENST00000297979 FAM168AQ92567 244 aa11.47□□□□□ -0.57
C9orf3-202ENST00000297979 SIRPDQ9H106 197 aa11.47□□□□□ -0.57
C9orf3-202ENST00000297979 VSIRQ9H7M9 311 aa11.47□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 109.6 ms