RNA–Protein interactions for RNA: ENST00000254950.12

VPS4A-201, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS4A, Length 4,100 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-201ENST00000254950 IGHV3-48P01763 117 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 BMI1P35226 326 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 CNN1P51911 297 aaKnown RBP9.45□□□□□ -0.9
VPS4A-201ENST00000254950 ZNF134P52741 427 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 RAB5BP61020 215 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 PRSS8Q16651 343 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 ZFYVE26Q68DK2 2539 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 IGHV2-70DA0A0C4DH43 119 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 H7BYZ3 331 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 MSMBP08118 114 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 RELBQ01201 579 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 MST1LQ2TV78 715 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 GRAMD2BQ96HH9 432 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 AAMDCQ9H7C9 122 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 TEX50A0A1B0GTY4 177 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 TMEM218A2RU14 115 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 IGKV1-16P04430 117 aa9.45□□□□□ -0.9
VPS4A-201ENST00000254950 TRAV30A0A087WSZ9 112 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 TRAV3A0A0B4J244 114 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 C1orf196B1AJZ1 125 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 C19orf84I3L1E1 186 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 SPP1P10451 314 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 RAB4BP61018 213 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 SLC35B1P78383 322 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 C10orf55Q5SWW7 151 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 ZNF833PQ6ZTB9 187 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 BORCS7Q96B45 105 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 TVP23CQ96ET8 276 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 P2RX4Q99571 388 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 TMEM204Q9BSN7 226 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 RPRMQ9NS64 109 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 OR10J4P0C629 311 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 HIST1H1BP16401 226 aaKnown RBP9.44□□□□□ -0.9
VPS4A-201ENST00000254950 STPG2Q8N412 459 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 BLNKQ8WV28 456 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 DPF1Q92782 380 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 RAB24Q969Q5 203 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 DYSFO75923 2080 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 CREBBPQ92793 2442 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 MYO18BQ8IUG5 2567 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 IGHV2-5P01817 119 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 C16orf82Q7Z2V1 217 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 OR8I2Q8N0Y5 310 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 AGMATQ9BSE5 352 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 SLC25A33Q9BSK2 321 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 NPCDR1Q9BY65 106 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 HIGD1AQ9Y241 93 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 ZNF292O60281 2723 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 CSPG4Q6UVK1 2322 aa9.44□□□□□ -0.9
VPS4A-201ENST00000254950 CLN5O75503 358 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 RD3LP0DJH9 198 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 UBE2E1P51965 193 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 KHDC3LQ587J8 217 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 ZNF843Q8N446 348 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 LINC01356Q8N9X3 169 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 OR5AN1Q8NGI8 311 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 NAV2Q8IVL1 2488 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 C11orf94C9JXX5 98 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 PAGE4O60829 102 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 IGKV1-39P01597 117 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 IGKV1D-39P04432 117 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 LYL1P12980 280 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 DLX1P56177 255 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 OR5R1Q8NH85 324 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 EAF1Q96JC9 268 aaPredicted RBP9.43□□□□□ -0.9
VPS4A-201ENST00000254950 BTF3L4Q96K17 158 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 SMDT1Q9H4I9 107 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 ZNF320A2RRD8 509 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 M0QZK8 103 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 SLC25A5P05141 298 aaKnown RBP9.43□□□□□ -0.9
VPS4A-201ENST00000254950 CT45A10P0DMU9 189 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 GATA3P23771 443 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 SAA4P35542 130 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 GPX4P36969 197 aaPredicted RBP9.43□□□□□ -0.9
VPS4A-201ENST00000254950 FHITP49789 147 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 Q5PR19 223 aa9.43□□□□□ -0.9
VPS4A-201ENST00000254950 FAM103A1Q9BTL3 118 aaKnown RBP9.43□□□□□ -0.9
VPS4A-201ENST00000254950 IGHV4-39P01824 125 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 KIAA0141Q14154 515 aaPredicted RBP9.42□□□□□ -0.9
VPS4A-201ENST00000254950 TMEM14EPQ6UXP3 125 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 PQLC2Q6ZP29 291 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 TMEM144Q7Z5S9 345 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 KIR3DL3Q8N743 410 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 STPG3Q8N7X2 389 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 MS4A10Q96PG2 267 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 C19orf24Q9BVV8 132 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 WNT10AQ9GZT5 417 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 DNAJC4Q9NNZ3 241 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 BCL2P10415 239 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 COL8A1P27658 744 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 TFF3Q07654 80 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 BRD3OSQ6XYD6 125 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 GATAD1Q8WUU5 269 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 SIGLEC9Q9Y336 463 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 RNF223E7ERA6 249 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 FLI1Q01543 452 aaPredicted RBP9.42□□□□□ -0.9
VPS4A-201ENST00000254950 C1orf122Q6ZSJ8 110 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 C8orf31Q8N9H6 132 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 OR10W1Q8NGF6 305 aa9.42□□□□□ -0.9
VPS4A-201ENST00000254950 BSCL2Q96G97 398 aaPredicted RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms