RNA–Protein interactions for RNA: ENST00000640313.1

VPS35-212, Transcript of VPS35, retromer complex component, humanhuman

TSL 5 BASIC

Gene VPS35, Length 141 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-212ENST00000640313 SYCP1Q15431 976 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ZNHIT3Q15649 155 aaPredicted RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 GUK1Q16774 197 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 DEFB113Q30KQ7 82 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SPRNQ5BIV9 151 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SPINK9Q5DT21 86 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 FBXO48Q5FWF7 155 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 C1orf137Q5JT78 98 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 C9orf64Q5T6V5 341 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 KRTAP26-1Q6PEX3 210 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 DNM1P34Q6PK57 102 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 LCN15Q6UWW0 184 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 C10orf67Q8IYJ2 551 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 BOD1L2Q8IYS8 172 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 C1orf158Q8N1D5 194 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 TMEM86AQ8N2M4 240 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 PDCL2Q8N4E4 241 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 LINC00311Q8N616 119 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ZNF676Q8N7Q3 588 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 OR11H6Q8NGC7 330 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 OR5B17Q8NGF7 314 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 OR2T27Q8NH04 317 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 LRRC20Q8TCA0 184 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ANKRD7Q92527 254 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 C12orf43Q96C57 262 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SMIM12Q96EX1 92 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 MSANTD3Q96H12 275 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ERMAPQ96PL5 475 aaPredicted RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 RBP7Q96R05 134 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SERPINI1Q99574 410 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 PRRT1Q99946 306 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 FAM103A1Q9BTL3 118 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 TMEM208Q9BTX3 173 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ASCL3Q9NQ33 180 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 GPR84Q9NQS5 396 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ZNHIT6Q9NWK9 470 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 OR5AC2Q9NZP5 309 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ANAPC10Q9UM13 185 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 SBDSQ9Y3A5 250 aaKnown RBP eCLIP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ANKRD17O75179 2603 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 NAV1Q8NEY1 1877 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 RIMS2Q9UQ26 1411 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 KNTC1P50748 2209 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 MAP3K19Q56UN5 1328 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 TTC21AQ8NDW8 1320 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 DSTQ03001 7570 aaKnown RBP-0.14□□□□□ -2.43
VPS35-212ENST00000640313 HEATR5AQ86XA9 2040 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 TNXBP22105 4242 aa-0.14□□□□□ -2.43
VPS35-212ENST00000640313 ABCA4P78363 2273 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 NUP153P49790 1475 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TENM2Q9NT68 2774 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 ABCA2Q9BZC7 2435 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DNAH9Q9NYC9 4486 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TRBV6-8A0A0A6YYG3 113 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TRAV12-1A0A0B4J245 112 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 IGHV1-69-2A0A0G2JMI3 117 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DAPL1A0PJW8 107 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TMEM213A2RRL7 107 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 C5orf49A4QMS7 147 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 FABP12A6NFH5 140 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 EVPLLA8MZ36 301 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 C21orf140B9A014 251 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 F5H768 121 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 INMT-MINDY4F8WBC2 141 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SMLR1H3BR10 107 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 K7ERQ8 282 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 M0R378 163 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SULT1C2O00338 296 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CCRL2O00421 344 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 NCR3O14931 201 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SLC22A1O15245 554 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CCL25O15444 150 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 OR1I1O60431 355 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 NDUFS6O75380 124 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 HYPMO75409 117 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 IGKV1-5P01602 117 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 APOA1P02647 267 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 PRM2P04554 102 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TPM2P07951 284 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 IL3P08700 152 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SRP19P09132 144 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 METTL15P1P0C7V9 234 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 RD3LP0DJH9 198 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CRYGAP11844 174 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 PVALBP20472 110 aaPredicted RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 RPS4Y1P22090 263 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CFL1P23528 166 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 FKBP2P26885 142 aaKnown RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CD40LGP29965 261 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 DDTP30046 118 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 HOXA6P31267 233 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 NUP62P37198 522 aaPredicted RBP-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SSR2P43308 183 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 CSN1S1P47710 185 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 MAP3K7CLP57077 242 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 AP1S1P61966 158 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 TNNC1P63316 161 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 PSG9Q00887 426 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 C12orf74Q32Q52 190 aa-0.15□□□□□ -2.43
VPS35-212ENST00000640313 SFXN4Q6P4A7 337 aa-0.15□□□□□ -2.43
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms