RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 MOSP00540 346 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 CA2P00918 260 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 SNRNP70P08621 437 aaKnown RBP13.5□□□□□ -0.25
CLN3-252ENST00000636907 NPY1RP25929 384 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 F2RL1P55085 397 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 LRRC75BQ2VPJ9 315 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 ETV3LQ6ZN32 361 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 PIP4P2Q8N4L2 257 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 OR2G3Q8NGZ4 309 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 SCGB1C1Q8TD33 95 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 C1orf159Q96HA4 380 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 EAF1Q96JC9 268 aaPredicted RBP13.5□□□□□ -0.25
CLN3-252ENST00000636907 TMEM147Q9BVK8 224 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 A0A1B0GW64 132 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 PRSS46E5RG02 174 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 TEX46H3BTG2 121 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 SCAF4O95104 1147 aaKnown RBP13.5□□□□□ -0.25
CLN3-252ENST00000636907 RAB11AP62491 216 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 HES1Q14469 280 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 MMDQ15546 238 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 Q5PR19 223 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 TMEM182Q6ZP80 229 aaPredicted RBP13.5□□□□□ -0.25
CLN3-252ENST00000636907 PPP1R27Q86WC6 154 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 GNPNAT1Q96EK6 184 aaPredicted RBP13.5□□□□□ -0.25
CLN3-252ENST00000636907 CITED4Q96RK1 184 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 WDR61Q9GZS3 305 aaKnown RBP13.5□□□□□ -0.25
CLN3-252ENST00000636907 MED9Q9NWA0 146 aa13.5□□□□□ -0.25
CLN3-252ENST00000636907 HELZ2Q9BYK8 2649 aaKnown RBP13.49□□□□□ -0.25
CLN3-252ENST00000636907 ABCA12Q86UK0 2595 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 IGHV3OR16-10A0A075B7F0 116 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 TNXAQ16473 311 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 VWC2Q2TAL6 325 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 RUSC1-AS1Q66K80 236 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 OR2T10Q8NGZ9 312 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 PARD6GQ9BYG4 376 aaPredicted RBP13.49□□□□□ -0.25
CLN3-252ENST00000636907 UQCC1Q9NVA1 299 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 HIF1ANQ9NWT6 349 aa13.49□□□□□ -0.25
CLN3-252ENST00000636907 NBPF19A0A087WUL8 3843 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 TRAV40A0A0B4J280 105 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 A0A1W2PN81 502 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 INS-IGF2F8WCM5 200 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 NBR2O15453 112 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 IFNA4P05014 189 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 MAS1LP35410 378 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 CHRNA7P36544 502 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 EBI3Q14213 229 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 BSXQ3C1V8 233 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 MAPK1IP1LQ8NDC0 245 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 NPBQ8NG41 125 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 TAF15Q92804 592 aaKnown RBP eCLIP13.48□□□□□ -0.25
CLN3-252ENST00000636907 MBD6Q96DN6 1003 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 SAT2Q96F10 170 aaPredicted RBP13.48□□□□□ -0.25
CLN3-252ENST00000636907 RSG1Q9BU20 258 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 C7orf69Q9H7B7 122 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 PFDN2Q9UHV9 154 aa13.48□□□□□ -0.25
CLN3-252ENST00000636907 TRAV20A0A0B4J274 112 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 IGHV1-69DA0A0B4J2H0 117 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 RNF223E7ERA6 249 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 FCN1O00602 326 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 NDUFA3O95167 84 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 IGHV1-69P01742 117 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 RNASE2P10153 161 aaKnown RBP13.47□□□□□ -0.25
CLN3-252ENST00000636907 RPL27AP46776 148 aaKnown RBP13.47□□□□□ -0.25
CLN3-252ENST00000636907 COMPP49747 757 aaPredicted RBP13.47□□□□□ -0.25
CLN3-252ENST00000636907 ERHP84090 104 aaKnown RBP13.47□□□□□ -0.25
CLN3-252ENST00000636907 WT1-ASQ06250 92 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 LOXL1Q08397 574 aaPredicted RBP13.47□□□□□ -0.25
CLN3-252ENST00000636907 PLGLAQ15195 96 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 Q8N6K4 173 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 LINC01356Q8N9X3 169 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 REG4Q9BYZ8 158 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 ACTL6BO94805 426 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 GNB1P62873 340 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 SSBP2P81877 361 aaPredicted RBP13.47□□□□□ -0.25
CLN3-252ENST00000636907 TUSC1Q2TAM9 212 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 C2orf83Q53S99 150 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 FAM120AOSQ5T036 256 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 PXDC1Q5TGL8 231 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 Q6ZRG5 221 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 KIAA1456Q9P272 454 aa13.47□□□□□ -0.25
CLN3-252ENST00000636907 PRH1P02810 166 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 IGHV4-38-2P0DP08 117 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 MDKP21741 143 aaPredicted RBP13.46□□□□□ -0.26
CLN3-252ENST00000636907 SNCAP37840 140 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 FHITP49789 147 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 RAB5CP51148 216 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 KRTAP1-3Q8IUG1 177 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 PSMG3Q9BT73 122 aaPredicted RBP13.46□□□□□ -0.26
CLN3-252ENST00000636907 GGACTQ9BVM4 153 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 PARP11Q9NR21 331 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 FBXO7Q9Y3I1 522 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 APCP25054 2843 aa13.46□□□□□ -0.26
CLN3-252ENST00000636907 MFSD2BA6NFX1 497 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 OR13C7P0DN81 318 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 TMEM11P17152 192 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 FGF7P21781 194 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 S100A1P23297 94 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 CAMLGP49069 296 aa13.45□□□□□ -0.26
CLN3-252ENST00000636907 ATP5IP56385 69 aaPredicted RBP13.45□□□□□ -0.26
CLN3-252ENST00000636907 BLOC1S1P78537 153 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms