RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 WBP4O75554 376 aaKnown RBP10.39□□□□□ -0.75
CLN3-249ENST00000636685 C4BPBP20851 252 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 MAS1LP35410 378 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 DEFB131AP59861 70 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 QRFPP83859 136 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 ARFRP1Q13795 201 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 LINC00299Q6ZSB3 139 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 PUSL1Q8N0Z8 303 aaKnown RBP10.39□□□□□ -0.75
CLN3-249ENST00000636685 CMSS1Q9BQ75 279 aaKnown RBP10.39□□□□□ -0.75
CLN3-249ENST00000636685 CABLES2Q9BTV7 478 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 LPAR5Q9H1C0 372 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 CLEC5AQ9NY25 188 aa10.39□□□□□ -0.75
CLN3-249ENST00000636685 IGHV7-4-1A0A0J9YVY3 117 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 EFCAB10A6NFE3 127 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 TMEM14DPA8MWL7 114 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 CELP19835 753 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 NPY1RP25929 384 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 TMEM50BP56557 158 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 RPL30P62888 115 aaKnown RBP10.38□□□□□ -0.75
CLN3-249ENST00000636685 UBE2UQ5VVX9 321 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 LIPKQ5VXJ0 399 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 STHQ8IWL8 128 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 TMEM116Q8NCL8 245 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 GIMAP1Q8WWP7 306 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 ARHGAP5-AS1Q96IT6 56 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 FUNDC2Q9BWH2 189 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 FKBP14Q9NWM8 211 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 CLEC2DQ9UHP7 191 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 TBC1D24Q9ULP9 559 aa10.38□□□□□ -0.75
CLN3-249ENST00000636685 IGHV3OR16-13A0A075B7E8 117 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 IGHV3-21A0A0B4J1V1 117 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 IGHV3-74A0A0B4J1X5 117 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 C15orf62A8K5M9 175 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 FOXI3A8MTJ6 420 aaPredicted RBP10.37□□□□□ -0.75
CLN3-249ENST00000636685 CDK1P06493 297 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 C1orf100Q5SVJ3 147 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 FAM90A2PQ658T7 463 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 C6orf223Q8N319 242 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 FAM24BQ8N5W8 94 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 VSTM2AQ8TAG5 236 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 VN1R17PQ8TDU5 208 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 APH1BQ8WW43 257 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 YIPF6Q96EC8 236 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 BSCL2Q96G97 398 aaPredicted RBP10.37□□□□□ -0.75
CLN3-249ENST00000636685 PECRQ9BY49 303 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 ACOT13Q9NPJ3 140 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 HSF4Q9ULV5 492 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 HMCN2Q8NDA2 5059 aa10.37□□□□□ -0.75
CLN3-249ENST00000636685 J3QRK9 145 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 RPL8P62917 257 aaKnown RBP10.36□□□□□ -0.75
CLN3-249ENST00000636685 SMN1Q16637 294 aaKnown RBP10.36□□□□□ -0.75
CLN3-249ENST00000636685 TMEM41BQ5BJD5 291 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 MORN3Q6PF18 240 aaPredicted RBP10.36□□□□□ -0.75
CLN3-249ENST00000636685 SPSB3Q6PJ21 355 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 KCTD9Q7L273 389 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 TRPT1Q86TN4 253 aaKnown RBP10.36□□□□□ -0.75
CLN3-249ENST00000636685 MAFIPQ8WZ33 124 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 ZNF414Q96IQ9 312 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 CMTM3Q96MX0 182 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 C18orf15Q96N68 181 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 NAA50Q9GZZ1 169 aaKnown RBP10.36□□□□□ -0.75
CLN3-249ENST00000636685 THYN1Q9P016 225 aa10.36□□□□□ -0.75
CLN3-249ENST00000636685 IGLC7A0M8Q6 106 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 F8W735 103 aaPredicted RBP10.35□□□□□ -0.75
CLN3-249ENST00000636685 GABARAPO95166 117 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 HLA-GP17693 338 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 KRTAP10-2P60368 255 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 PAFAH1B2P68402 229 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 PLA2G7Q13093 441 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 TBCEQ15813 527 aaPredicted RBP10.35□□□□□ -0.75
CLN3-249ENST00000636685 AHSA2Q719I0 299 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 TCF24Q7RTU0 167 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 FAM89BQ8N5H3 189 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 CSNK1G2-AS1Q8NCQ2 148 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 GINS4Q9BRT9 223 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 TMEM14BQ9NUH8 114 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 MRPS7Q9Y2R9 242 aaKnown RBP10.35□□□□□ -0.75
CLN3-249ENST00000636685 PRELID3BQ9Y3B1 194 aa10.35□□□□□ -0.75
CLN3-249ENST00000636685 DFFBO76075 338 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 PSMB9P28065 219 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 OR2B8PP59922 312 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 INSL4Q14641 139 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 PLAC9Q5JTB6 97 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 LRRTM1Q86UE6 522 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 UBAC2Q8NBM4 344 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 BORCS5Q969J3 196 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 FAM210BQ96KR6 192 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 URM1Q9BTM9 101 aaKnown RBP10.34□□□□□ -0.75
CLN3-249ENST00000636685 MS4A6AQ9H2W1 248 aa10.34□□□□□ -0.75
CLN3-249ENST00000636685 NBDYA0A0U1RRE5 68 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 IRGMA1A4Y4 181 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 DNASE2O00115 360 aaPredicted RBP10.33□□□□□ -0.76
CLN3-249ENST00000636685 NUPL2O15504 423 aaKnown RBP10.33□□□□□ -0.76
CLN3-249ENST00000636685 BPNT1O95861 308 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 SPP1P10451 314 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 CD36P16671 472 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 ZNF182P17025 639 aaPredicted RBP10.33□□□□□ -0.76
CLN3-249ENST00000636685 BRWD1-AS2P59051 145 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 ST3GAL4Q11206 333 aa10.33□□□□□ -0.76
CLN3-249ENST00000636685 P2RY14Q15391 338 aa10.33□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms