RNA–Protein interactions for RNA: ENST00000625299.1

PNKP-218, Transcript of polynucleotide kinase 3'-phosphatase, humanhuman

TSL 5

Gene PNKP, Length 428 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PNKP-218ENST00000625299 SPSB3Q6PJ21 355 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 SPAG16Q8N0X2 631 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 GBGT1Q8N5D6 347 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 NUDCD2Q8WVJ2 157 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 SECTM1Q8WVN6 248 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 QTRT1Q9BXR0 403 aaKnown RBP10.73□□□□□ -0.69
PNKP-218ENST00000625299 SCN3BQ9NY72 215 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 C21orf62Q9NYP8 219 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 DNAH11Q96DT5 4516 aa10.73□□□□□ -0.69
PNKP-218ENST00000625299 K7EMT4 169 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 UPK2O00526 184 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 PDCD5O14737 125 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 OR13C7P0DN81 318 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 ADMP35318 185 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 CMC4P56277 68 aaPredicted RBP10.72□□□□□ -0.69
PNKP-218ENST00000625299 IRF3Q14653 427 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 CDNFQ49AH0 187 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 CNIH2Q6PI25 160 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 GDPD1Q8N9F7 314 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 AIFM2Q9BRQ8 373 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 RHPN1-AS1Q9BWJ2 59 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 CCL28Q9NRJ3 127 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 SMPXQ9UHP9 88 aa10.72□□□□□ -0.69
PNKP-218ENST00000625299 IGHV3OR16-13A0A075B7E8 117 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 IGHV3-74A0A0B4J1X5 117 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 IGHV7-4-1A0A0J9YVY3 117 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 PRSS29PA6NIE9 313 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 IFITM5A6NNB3 132 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 C15orf62A8K5M9 175 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 SULT1C2O00338 296 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 MRPS14O60783 128 aaKnown RBP10.71□□□□□ -0.69
PNKP-218ENST00000625299 YIF1AO95070 293 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 ARL6IP1Q15041 203 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 HACD4Q5VWC8 232 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 TMEM116Q8NCL8 245 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 DMBX1Q8NFW5 382 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 SCARB1Q8WTV0 552 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 CMTM3Q96MX0 182 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 SRSF8Q9BRL6 282 aaKnown RBP10.71□□□□□ -0.69
PNKP-218ENST00000625299 HINT2Q9BX68 163 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 TMEM140Q9NV12 185 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 ETV7Q9Y603 341 aa10.71□□□□□ -0.69
PNKP-218ENST00000625299 IGHV4-4A0A075B6R2 117 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 TMEM235A6NFC5 223 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 CHEK1O14757 476 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 SERPINE2P07093 398 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 TRAPPC2P0DI81 140 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 TRAPPC2BP0DI82 140 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 NQO2P16083 231 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 MYL9P24844 172 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 HLA-DMBP28068 263 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 TAS2R31P59538 309 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 GNG2P59768 71 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 WT1-ASQ06250 92 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 MLLT11Q13015 90 aaPredicted RBP10.7□□□□□ -0.7
PNKP-218ENST00000625299 LEMD1Q68G75 181 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 NR2C2APQ86WQ0 139 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 CCDC90BQ9GZT6 254 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 DCSTAMPQ9H295 470 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 ACOT13Q9NPJ3 140 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 ANXA10Q9UJ72 324 aa10.7□□□□□ -0.7
PNKP-218ENST00000625299 TRAV10A0A0B4J240 114 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 SMIM30A4D0T7 59 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 F8W735 103 aaPredicted RBP10.69□□□□□ -0.7
PNKP-218ENST00000625299 M0R2N4 97 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 PTHLHP12272 177 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 ARPC4P59998 168 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 CATR1Q13166 79 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 RCN1Q15293 331 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 Q6ZTC4 211 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 CENPSQ8N2Z9 138 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 Q8NAQ8 132 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 OR13F1Q8NGS4 319 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 OR51H1Q8NH63 302 aa10.69□□□□□ -0.7
PNKP-218ENST00000625299 F11RQ9Y624 299 aaKnown RBP10.69□□□□□ -0.7
PNKP-218ENST00000625299 IGHV4-28A0A0C4DH34 117 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 TEX50A0A1B0GTY4 177 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 HPRT1P00492 218 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 RAB3BP20337 219 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 FCGR2CP31995 323 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 FXYD4P59646 89 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 PAFAH1B2P68402 229 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 RELQ04864 619 aaPredicted RBP10.68□□□□□ -0.7
PNKP-218ENST00000625299 THOC7Q6I9Y2 204 aaKnown RBP10.68□□□□□ -0.7
PNKP-218ENST00000625299 MGLLQ99685 303 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 HRH4Q9H3N8 390 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 PKD1P98161 4303 aa10.68□□□□□ -0.7
PNKP-218ENST00000625299 TRAV1-2A0A0B4J238 106 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 C15orf61A6NNL5 157 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 K7EIM0 57 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 NUPL2O15504 423 aaKnown RBP10.67□□□□□ -0.7
PNKP-218ENST00000625299 RBFOX2O43251 390 aaKnown RBP eCLIP10.67□□□□□ -0.7
PNKP-218ENST00000625299 RGS10O43665 173 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 SSX5O60225 188 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 RBMY1A1P0DJD3 496 aaKnown RBP10.67□□□□□ -0.7
PNKP-218ENST00000625299 RBMY1CP0DJD4 496 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 DEFB131AP59861 70 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 RBMY1FQ15415 496 aaKnown RBP10.67□□□□□ -0.7
PNKP-218ENST00000625299 TCF24Q7RTU0 167 aa10.67□□□□□ -0.7
PNKP-218ENST00000625299 HSD17B13Q7Z5P4 300 aaPredicted RBP10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms