RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 CD83Q01151 205 aa11.8□□□□□ -0.52
TRIM28-207ENST00000597136 CXorf66Q5JRM2 361 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-207ENST00000597136 WIPF2Q8TF74 440 aaPredicted RBP11.8□□□□□ -0.52
TRIM28-207ENST00000597136 OR51B2Q9Y5P1 312 aa11.8□□□□□ -0.52
TRIM28-207ENST00000597136 TEX50A0A1B0GTY4 177 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 CA2P00918 260 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 TNFRSF9Q07011 255 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 ZNF562Q6V9R5 426 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 SLC35E3Q7Z769 313 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 ASB13Q8WXK3 278 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 FYTTD1Q96QD9 318 aaKnown RBP11.79□□□□□ -0.52
TRIM28-207ENST00000597136 CITED1Q99966 193 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 COMMD5Q9GZQ3 224 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 ZNF257Q9Y2Q1 563 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 IGHV7-81A0A0B4J1V7 117 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 FAM90A26D6RGX4 464 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 ACTL6BO94805 426 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 NXPH3O95157 252 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 MBPP02686 304 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-207ENST00000597136 NKX2-1P43699 371 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-207ENST00000597136 RAP2BP61225 183 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 HSPE1P61604 102 aaKnown RBP11.79□□□□□ -0.52
TRIM28-207ENST00000597136 GNB1P62873 340 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 CX3CL1P78423 397 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 ID3Q02535 119 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 TNXAQ16473 311 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 C10orf55Q5SWW7 151 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 CENPVQ7Z7K6 275 aaPredicted RBP11.79□□□□□ -0.52
TRIM28-207ENST00000597136 OR5B3Q8NH48 314 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 OR52E5Q8NH55 327 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 ST6GAL2Q96JF0 529 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 HSPB7Q9UBY9 170 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 CACFD1Q9UGQ2 172 aa11.79□□□□□ -0.52
TRIM28-207ENST00000597136 E7EUB6 86 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 CCNKO75909 580 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 IFNA17P01571 189 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 OPN1MWP04001 364 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 OPN1MW2P0DN77 364 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 OPN1MW3P0DN78 364 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 CD28P10747 220 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 SPCS3P61009 180 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 FXYD3Q14802 87 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 PDLIM3Q53GG5 364 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-207ENST00000597136 ZNF329Q86UD4 541 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 OR1L8Q8NGR8 309 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 PPP1R1CQ8WVI7 109 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 RANGRFQ9HD47 186 aaPredicted RBP11.78□□□□□ -0.52
TRIM28-207ENST00000597136 NDUFA4L2Q9NRX3 87 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 FBXO7Q9Y3I1 522 aa11.78□□□□□ -0.52
TRIM28-207ENST00000597136 A0A1B0GW64 132 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 CNIH1O95406 144 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 SCGB1D2O95969 90 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 RPL27AP46776 148 aaKnown RBP11.77□□□□□ -0.53
TRIM28-207ENST00000597136 NDPQ00604 133 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 RAB32Q13637 225 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 SHISA2Q6UWI4 295 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 AKAP14Q86UN6 197 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 OR5AU1Q8NGC0 362 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 NEURL2Q9BR09 285 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 MAGT1Q9H0U3 335 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 NOTCH3Q9UM47 2321 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 NBEAL1Q6ZS30 2694 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 CMYA5Q8N3K9 4069 aa11.77□□□□□ -0.53
TRIM28-207ENST00000597136 CGB1A6NKQ9 187 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 EGR2P11161 476 aaPredicted RBP11.76□□□□□ -0.53
TRIM28-207ENST00000597136 PSMB6P28072 239 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 POLR2GP62487 172 aaKnown RBP eCLIP11.76□□□□□ -0.53
TRIM28-207ENST00000597136 PRCDQ00LT1 54 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 SPINK9Q5DT21 86 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 TCTEX1D4Q5JR98 221 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 STPG2Q8N412 459 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 SRSF12Q8WXF0 261 aaKnown RBP11.76□□□□□ -0.53
TRIM28-207ENST00000597136 HINT2Q9BX68 163 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 RBKSQ9H477 322 aa11.76□□□□□ -0.53
TRIM28-207ENST00000597136 G3V318 75 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 K7EPK0 472 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 ATP6V0E1O15342 81 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 SYNGR2O43760 224 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 S100A10P60903 97 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 LRRC37A5PQ49AS3 106 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 Q5BKY6 102 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 OR2T35Q8NGX2 323 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 GRPEL2Q8TAA5 225 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 ARPC1AQ92747 370 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 FAM103A1Q9BTL3 118 aaKnown RBP11.75□□□□□ -0.53
TRIM28-207ENST00000597136 PARP11Q9NR21 331 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 RCL1Q9Y2P8 373 aaKnown RBP11.75□□□□□ -0.53
TRIM28-207ENST00000597136 WSB1Q9Y6I7 421 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 MGAM2Q2M2H8 2515 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 MSGN1A6NI15 193 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 CEBPZOSA8MTT3 80 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 TEX22C9J3V5 150 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 AP4M1O00189 453 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 KCNAB3O43448 404 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 MED6O75586 246 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 MPC2O95563 127 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 CD300CQ08708 224 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 OR10W1Q8NGF6 305 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 ZFP57Q9NU63 452 aa11.75□□□□□ -0.53
TRIM28-207ENST00000597136 LSM5Q9Y4Y9 91 aaKnown RBP11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms