RNA–Protein interactions for RNA: ENST00000571456.1

VPS53-210, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-210ENST00000571456 KRTAP10-3P60369 221 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 C2orf68Q2NKX9 166 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 TTC9CQ8N5M4 171 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 COQ8AQ8NI60 647 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 PDCD10Q9BUL8 212 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 NUDT15Q9NV35 164 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 COA4Q9NYJ1 87 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 OR51B2Q9Y5P1 312 aa16.09■□□□□ 0.17
VPS53-210ENST00000571456 TRAV3A0A0B4J244 114 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 C9orf170A2RU37 121 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 NPIPB5A8MRT5 1133 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 CYB5BO43169 146 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 RBMXL2O75526 392 aaKnown RBP16.08■□□□□ 0.16
VPS53-210ENST00000571456 DUS4LO95620 317 aaKnown RBP16.08■□□□□ 0.16
VPS53-210ENST00000571456 TRAPPC2P0DI81 140 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 TRAPPC2BP0DI82 140 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 C4orf46Q504U0 113 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 REC114Q7Z4M0 266 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 LYG2Q86SG7 212 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 LHFPL5Q8TAF8 219 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.08■□□□□ 0.16
VPS53-210ENST00000571456 TMED3Q9Y3Q3 217 aa16.08■□□□□ 0.16
VPS53-210ENST00000571456 PRB2P02812 416 aaPredicted RBP16.07■□□□□ 0.16
VPS53-210ENST00000571456 H2AFB2P0C5Z0 115 aa16.07■□□□□ 0.16
VPS53-210ENST00000571456 CDX1P47902 265 aaPredicted RBP16.07■□□□□ 0.16
VPS53-210ENST00000571456 HSPE1P61604 102 aaKnown RBP16.07■□□□□ 0.16
VPS53-210ENST00000571456 DHRS2Q13268 280 aa16.07■□□□□ 0.16
VPS53-210ENST00000571456 AARDQ4LEZ3 155 aa16.07■□□□□ 0.16
VPS53-210ENST00000571456 SLC35G3Q8N808 338 aa16.07■□□□□ 0.16
VPS53-210ENST00000571456 MYOZ3Q8TDC0 251 aa16.07■□□□□ 0.16
VPS53-210ENST00000571456 FYTTD1Q96QD9 318 aaKnown RBP16.07■□□□□ 0.16
VPS53-210ENST00000571456 CITED2Q99967 270 aaPredicted RBP16.07■□□□□ 0.16
VPS53-210ENST00000571456 NDUFA4L2Q9NRX3 87 aa16.07■□□□□ 0.16
VPS53-210ENST00000571456 FLVCR2Q9UPI3 526 aa16.07■□□□□ 0.16
VPS53-210ENST00000571456 TEX50A0A1B0GTY4 177 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 TEX22C9J3V5 150 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 CRYGCP07315 174 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 PF4V1P10720 104 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 SLC25A6P12236 298 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 RAB9AP51151 201 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 TCTEX1D4Q5JR98 221 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 C10orf55Q5SWW7 151 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 KPRPQ5T749 579 aaPredicted RBP16.06■□□□□ 0.16
VPS53-210ENST00000571456 ASPHD1Q5U4P2 390 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 PLET1Q6UQ28 207 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 OR1L6Q8NGR2 347 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 OR52E5Q8NH55 327 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 UBE2E2Q96LR5 201 aa16.06■□□□□ 0.16
VPS53-210ENST00000571456 TRAV6A0A075B6T7 132 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 A0A0G2JLM5 398 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 G3V4G9 280 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 SULT1A3P0DMM9 295 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 SULT1A4P0DMN0 295 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 HIST1H1BP16401 226 aaKnown RBP16.05■□□□□ 0.16
VPS53-210ENST00000571456 ANXA7P20073 488 aaKnown RBP16.05■□□□□ 0.16
VPS53-210ENST00000571456 RPL23AP62750 156 aaKnown RBP16.05■□□□□ 0.16
VPS53-210ENST00000571456 PRCDQ00LT1 54 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 KLK9Q2XQG4 91 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 NMSQ5H8A3 153 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 FAM209BQ5JX69 171 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 C10orf99Q6UWK7 81 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 OR4F17Q8NGA8 305 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 CASTOR1Q8WTX7 329 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 OR4F4Q96R69 305 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 KLK9Q9UKQ9 250 aa16.05■□□□□ 0.16
VPS53-210ENST00000571456 A0A0B4J293 547 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 A0A1B0GU03 582 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 INS-IGF2F8WCM5 200 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 SOX15O60248 233 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 PRAF2O60831 178 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 PTTG1O95997 202 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 PSMB6P28072 239 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 NRARPQ7Z6K4 114 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 C11orf44Q8N8P7 122 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 OR5T1Q8NG75 326 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 MITD1Q8WV92 249 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 USMG5Q96IX5 58 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 NSG2Q9Y328 171 aa16.04■□□□□ 0.16
VPS53-210ENST00000571456 IGLC7A0M8Q6 106 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 IL5P05113 134 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 CTRB1P17538 263 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 SMCO1Q147U7 214 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 ANKRD55Q3KP44 614 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 KHDC1LQ5JSQ8 128 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 CTRB2Q6GPI1 263 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 LYZL2Q7Z4W2 148 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 MRAPQ8TCY5 172 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 GPR146Q96CH1 333 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 GPN1Q9HCN4 374 aaPredicted RBP16.03■□□□□ 0.16
VPS53-210ENST00000571456 ZNF355PQ9NSJ1 428 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 THYN1Q9P016 225 aa16.03■□□□□ 0.16
VPS53-210ENST00000571456 CGB1A6NKQ9 187 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 FAM223BA6NKX1 122 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 E7EUB6 86 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 IFNA21P01568 189 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 IFNA17P01571 189 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 TRGV3P03979 118 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 RPLP1P05386 114 aaKnown RBP16.02■□□□□ 0.16
VPS53-210ENST00000571456 SPCS3P61009 180 aa16.02■□□□□ 0.16
VPS53-210ENST00000571456 ERHP84090 104 aaKnown RBP16.02■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 81.5 ms