RNA–Protein interactions for RNA: ENST00000566808.2

CDH3-205, Transcript of cadherin 3, humanhuman

TSL 5

Gene CDH3, Length 573 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-205ENST00000566808 Q6ZS49 121 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 ZNF767PQ75MW2 155 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 RAB3CQ96E17 227 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 SCRT1Q9BWW7 348 aa12.08□□□□□ -0.48
CDH3-205ENST00000566808 IGHV3-49A0A0A0MS15 119 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 F8W735 103 aaPredicted RBP12.07□□□□□ -0.48
CDH3-205ENST00000566808 CIB2O75838 187 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 IGLV2-14P01704 120 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 RELQ04864 619 aaPredicted RBP12.07□□□□□ -0.48
CDH3-205ENST00000566808 TNP2Q05952 138 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 RNF212Q495C1 297 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 THOC7Q6I9Y2 204 aaKnown RBP12.07□□□□□ -0.48
CDH3-205ENST00000566808 TRPT1Q86TN4 253 aaKnown RBP12.07□□□□□ -0.48
CDH3-205ENST00000566808 ZNF555Q8NEP9 628 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 OR10C1Q96KK4 312 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 AIFM2Q9BRQ8 373 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 QTRT1Q9BXR0 403 aaKnown RBP12.07□□□□□ -0.48
CDH3-205ENST00000566808 HRASLSQ9HDD0 168 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 TBC1D24Q9ULP9 559 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 OR2W1Q9Y3N9 320 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 DNAH5Q8TE73 4624 aa12.07□□□□□ -0.48
CDH3-205ENST00000566808 TRAV2A0A0B4J234 112 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 J3QRK9 145 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 HLA-DQB1P01920 261 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 FGF2P09038 288 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 UCHL1P09936 223 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 C4BPBP20851 252 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 NPY1RP25929 384 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 RASSF2P50749 326 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 BRWD1-AS2P59051 145 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 PLA2G7Q13093 441 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 EIF4EBP1Q13541 118 aaPredicted RBP12.06□□□□□ -0.48
CDH3-205ENST00000566808 TCF24Q7RTU0 167 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 UBAC2Q8NBM4 344 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 GIMAP1Q8WWP7 306 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 FAM210BQ96KR6 192 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 COMMD5Q9GZQ3 224 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 TMEM14BQ9NUH8 114 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 SPATA2Q9UM82 520 aa12.06□□□□□ -0.48
CDH3-205ENST00000566808 SRRM2Q9UQ35 2752 aaKnown RBP12.05□□□□□ -0.48
CDH3-205ENST00000566808 MFNGO00587 321 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 DENRO43583 198 aaKnown RBP12.05□□□□□ -0.48
CDH3-205ENST00000566808 Q56UQ5 140 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 ZFP1Q6P2D0 407 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 ZNF367Q7RTV3 350 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 HSD17B13Q7Z5P4 300 aaPredicted RBP12.05□□□□□ -0.48
CDH3-205ENST00000566808 SCARB1Q8WTV0 552 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 DGCR14Q96DF8 476 aaKnown RBP12.05□□□□□ -0.48
CDH3-205ENST00000566808 ZNF414Q96IQ9 312 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 GFI1Q99684 422 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 TAS2R8Q9NYW2 309 aa12.05□□□□□ -0.48
CDH3-205ENST00000566808 IGKV1D-8A0A087WSZ0 117 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 NUPL2O15504 423 aaKnown RBP12.04□□□□□ -0.48
CDH3-205ENST00000566808 SERPINE2P07093 398 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 GADD45AP24522 165 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 TALDO1P37837 337 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 RANBP1P43487 201 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 SLC25A24Q6NUK1 477 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 ZNF66Q6ZN08 573 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 OR10W1Q8NGF6 305 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 FAM3DQ96BQ1 224 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 MS4A6AQ9H2W1 248 aa12.04□□□□□ -0.48
CDH3-205ENST00000566808 TRAV14DV4A0A0A6YYC5 116 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 IGHV3-21A0A0B4J1V1 117 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 IGKV1D-13A0A0B4J2D9 117 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 DNASE2O00115 360 aaPredicted RBP12.03□□□□□ -0.48
CDH3-205ENST00000566808 YIF1AO95070 293 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 EIF4EP06730 217 aaKnown RBP12.03□□□□□ -0.48
CDH3-205ENST00000566808 CTSGP08311 255 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 OR13C7P0DN81 318 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 IGKV1-13P0DP09 117 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 HIST1H1DP16402 221 aaKnown RBP12.03□□□□□ -0.48
CDH3-205ENST00000566808 GNB3P16520 340 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 NFYAP23511 347 aaPredicted RBP12.03□□□□□ -0.48
CDH3-205ENST00000566808 CLDN12P56749 244 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 MFSD4AQ8N468 514 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 FAM24BQ8N5W8 94 aa12.03□□□□□ -0.48
CDH3-205ENST00000566808 F11RQ9Y624 299 aaKnown RBP12.03□□□□□ -0.48
CDH3-205ENST00000566808 IGHV3OR16-13A0A075B7E8 117 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 IGHV3-74A0A0B4J1X5 117 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 K7EIM0 57 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 CTXN2P0C2S0 81 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 WT1-ASQ06250 92 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 POU2AF1Q16633 256 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 ZNF773Q6PK81 442 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 CSNK1G2-AS1Q8NCQ2 148 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 OR10R2Q8NGX6 335 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 RAB22AQ9UL26 194 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 MYCBP2O75592 4640 aa12.02□□□□□ -0.49
CDH3-205ENST00000566808 A0A075B6Q4 140 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 TMEM272A0A1B0GTI8 110 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 UPK2O00526 184 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 ST8SIA3O43173 380 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 RBFOX2O43251 390 aaKnown RBP eCLIP12.01□□□□□ -0.49
CDH3-205ENST00000566808 DTYMKP23919 212 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 TAS2R31P59538 309 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 C2orf76Q3KRA6 126 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 NANOGP1Q8N7R0 232 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 GINS3Q9BRX5 216 aa12.01□□□□□ -0.49
CDH3-205ENST00000566808 RNF167Q9H6Y7 350 aa12.01□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms