RNA–Protein interactions for RNA: ENST00000562754.1

VPS4A-202, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 2

Gene VPS4A, Length 633 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-202ENST00000562754 OR10W1Q8NGF6 305 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 OR52E5Q8NH55 327 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 CHAC2Q8WUX2 184 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 NOL4LQ96MY1 436 aaPredicted RBP13.06□□□□□ -0.32
VPS4A-202ENST00000562754 PDCD10Q9BUL8 212 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 LINC00527Q9UJ94 153 aa13.06□□□□□ -0.32
VPS4A-202ENST00000562754 FAM90A26D6RGX4 464 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 NDUFA7O95182 113 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 SCGB1D2O95969 90 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 MBPP02686 304 aaPredicted RBP13.05□□□□□ -0.32
VPS4A-202ENST00000562754 IGF1P05019 195 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 NKX2-1P43699 371 aaPredicted RBP13.05□□□□□ -0.32
VPS4A-202ENST00000562754 BCAP31P51572 246 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 ID3Q02535 119 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 SGMS2Q8NHU3 365 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 NMES1Q9C002 83 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 ZNF436Q9C0F3 470 aaPredicted RBP13.05□□□□□ -0.32
VPS4A-202ENST00000562754 MAGT1Q9H0U3 335 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 RBKSQ9H477 322 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 SERTAD4Q9NUC0 356 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 RCL1Q9Y2P8 373 aaKnown RBP13.05□□□□□ -0.32
VPS4A-202ENST00000562754 WSB1Q9Y6I7 421 aa13.05□□□□□ -0.32
VPS4A-202ENST00000562754 G3V318 75 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 AP4M1O00189 453 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 AREGP15514 252 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 VDAC2P45880 294 aaPredicted RBP13.04□□□□□ -0.32
VPS4A-202ENST00000562754 POLR2GP62487 172 aaKnown RBP eCLIP13.04□□□□□ -0.32
VPS4A-202ENST00000562754 WT1-ASQ06250 92 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 ECSCRQ19T08 205 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP13.04□□□□□ -0.32
VPS4A-202ENST00000562754 LFNGQ8NES3 379 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 C16orf95Q9H693 158 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 PLEKHA3Q9HB20 300 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 ZNF580Q9UK33 172 aa13.04□□□□□ -0.32
VPS4A-202ENST00000562754 CEBPZOSA8MTT3 80 aa13.03□□□□□ -0.32
VPS4A-202ENST00000562754 GIPP09681 153 aaPredicted RBP13.03□□□□□ -0.32
VPS4A-202ENST00000562754 HOXA1P49639 335 aaPredicted RBP13.03□□□□□ -0.32
VPS4A-202ENST00000562754 RAB32Q13637 225 aa13.03□□□□□ -0.32
VPS4A-202ENST00000562754 ARSJQ5FYB0 599 aaPredicted RBP13.03□□□□□ -0.32
VPS4A-202ENST00000562754 UNQ5815/PRO19632Q6UWF5 114 aa13.03□□□□□ -0.32
VPS4A-202ENST00000562754 C19orf35Q6ZS72 473 aa13.03□□□□□ -0.32
VPS4A-202ENST00000562754 STPG2Q8N412 459 aa13.03□□□□□ -0.32
VPS4A-202ENST00000562754 OR2T6Q8NHC8 308 aa13.03□□□□□ -0.32
VPS4A-202ENST00000562754 TRAV41A0A0B4J266 112 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 A0A1W2PN81 502 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 K7EPK0 472 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 SYNGR2O43760 224 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 REG1AP05451 166 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 IAPPP10997 89 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 CHRNA7P36544 502 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 S100A10P60903 97 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 CYCSP99999 105 aaKnown RBP13.02□□□□□ -0.33
VPS4A-202ENST00000562754 CFHR3Q02985 330 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 DTD1Q8TEA8 209 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 SRSF8Q9BRL6 282 aaKnown RBP13.02□□□□□ -0.33
VPS4A-202ENST00000562754 CACFD1Q9UGQ2 172 aa13.02□□□□□ -0.33
VPS4A-202ENST00000562754 LSM5Q9Y4Y9 91 aaKnown RBP13.02□□□□□ -0.33
VPS4A-202ENST00000562754 INS-IGF2F8WCM5 200 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 SSSCA1O60232 199 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 SOX15O60248 233 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 OR13C7P0DN81 318 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 HKR1P10072 659 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 CD83Q01151 205 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 LRRC37A5PQ49AS3 106 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 OR2C3Q8N628 320 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 LINC01006Q8NI28 216 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 PPP1R1CQ8WVI7 109 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 C11orf1Q9H5F2 150 aa13.01□□□□□ -0.33
VPS4A-202ENST00000562754 NPIPB5A8MRT5 1133 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 H0YIZ8 118 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 MED6O75586 246 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 TMEM50AO95807 157 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 CTRB1P17538 263 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 PSMB6P28072 239 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 PPIFP30405 207 aaKnown RBP13□□□□□ -0.33
VPS4A-202ENST00000562754 RAP2BP61225 183 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 AKIRIN2Q53H80 203 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 CTRB2Q6GPI1 263 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 C10orf99Q6UWK7 81 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 OR4F5Q8NH21 305 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 FAM110DQ8TAY7 271 aaPredicted RBP13□□□□□ -0.33
VPS4A-202ENST00000562754 WNT10AQ9GZT5 417 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 ENY2Q9NPA8 101 aa13□□□□□ -0.33
VPS4A-202ENST00000562754 TRAV14DV4A0A0A6YYC5 116 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 G3V3Q6 166 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 WRBO00258 174 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 FBXO24O75426 580 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 CRYGCP07315 174 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 MDKP21741 143 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-202ENST00000562754 PAX9P55771 341 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 TMEM267Q0VDI3 215 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-202ENST00000562754 BSXQ3C1V8 233 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 KRTAP24-1Q3LI83 254 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 Q5BKY6 102 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 HSD17B13Q7Z5P4 300 aaPredicted RBP12.99□□□□□ -0.33
VPS4A-202ENST00000562754 TTC9CQ8N5M4 171 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 OR5T1Q8NG75 326 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 TMEM170AQ8WVE7 144 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 ASB13Q8WXK3 278 aa12.99□□□□□ -0.33
VPS4A-202ENST00000562754 ST6GAL2Q96JF0 529 aa12.99□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 39.7 ms