RNA–Protein interactions for RNA: ENST00000562670.5

CLK3-209, Transcript of CDC like kinase 3, humanhuman

TSL 4

Gene CLK3, Length 544 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-209ENST00000562670 PLGLAQ15195 96 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 FAM120AOSQ5T036 256 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 ZNF562Q6V9R5 426 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 ZNF114Q8NC26 417 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 SSX3Q99909 188 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 ARPC5LQ9BPX5 153 aa11.09□□□□□ -0.63
CLK3-209ENST00000562670 STRAPQ9Y3F4 350 aaKnown RBP11.09□□□□□ -0.63
CLK3-209ENST00000562670 OTOGQ6ZRI0 2925 aa11.08□□□□□ -0.63
CLK3-209ENST00000562670 SVEP1Q4LDE5 3571 aa11.08□□□□□ -0.63
CLK3-209ENST00000562670 MYO9AB2RTY4 2548 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 FAM24AA6NFZ4 105 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 CGB1A6NKQ9 187 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 CA2P00918 260 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 FOSL1P15407 271 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 HNF1AP20823 631 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 HTR2BP41595 481 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 HNF4GQ14541 408 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 TNXAQ16473 311 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 DEFB112Q30KQ8 113 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 SLC51BQ86UW2 128 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 SLC24A4Q8NFF2 622 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 STOML3Q8TAV4 291 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 SRSF12Q8WXF0 261 aaKnown RBP11.08□□□□□ -0.64
CLK3-209ENST00000562670 OR4C12Q96R67 309 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 SLC25A33Q9BSK2 321 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 HEYLQ9NQ87 328 aaPredicted RBP11.08□□□□□ -0.64
CLK3-209ENST00000562670 FBXL17Q9UF56 701 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 BOLA1Q9Y3E2 137 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 TNCP24821 2201 aa11.08□□□□□ -0.64
CLK3-209ENST00000562670 TET2Q6N021 2002 aaPredicted RBP11.08□□□□□ -0.64
CLK3-209ENST00000562670 A0A1B0GW64 132 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 IGLC7A0M8Q6 106 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 C15orf62A8K5M9 175 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 TEX22C9J3V5 150 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 H3BP45 60 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 H3BUX3 64 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 KCNAB3O43448 404 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 MYOD1P15172 320 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 AP2S1P53680 142 aaPredicted RBP11.07□□□□□ -0.64
CLK3-209ENST00000562670 HBG1P69891 147 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 HBG2P69892 147 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 C2orf83Q53S99 150 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 SPANXN5Q5MJ07 72 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 C10orf55Q5SWW7 151 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 C5orf56Q8N8D9 126 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 PINX1Q96BK5 328 aaKnown RBP11.07□□□□□ -0.64
CLK3-209ENST00000562670 SLA2Q9H6Q3 261 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 ZC4H2Q9NQZ6 224 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 NOTCH2Q04721 2471 aa11.07□□□□□ -0.64
CLK3-209ENST00000562670 NCBP2LA6PVI3 153 aaKnown RBP11.06□□□□□ -0.64
CLK3-209ENST00000562670 PMS2P5A8MQ11 134 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 E7EUB6 86 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 DFFBO76075 338 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 NPY1RP25929 384 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 IER3P46695 156 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 UBA52P62987 128 aaKnown RBP11.06□□□□□ -0.64
CLK3-209ENST00000562670 EIF5AP63241 154 aaKnown RBP11.06□□□□□ -0.64
CLK3-209ENST00000562670 ERHP84090 104 aaKnown RBP11.06□□□□□ -0.64
CLK3-209ENST00000562670 SCGB2A2Q13296 93 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 ZNF266Q14584 549 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 SPINK9Q5DT21 86 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 PVRIGQ6DKI7 326 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 Q6YL49 198 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 SSMEM1Q8WWF3 244 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 RASL11BQ9BPW5 248 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 GGACTQ9BVM4 153 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 TEX15Q9BXT5 2789 aa11.06□□□□□ -0.64
CLK3-209ENST00000562670 PRSS46E5RG02 174 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 FNDC10F2Z333 226 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 FCN1O00602 326 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 JTBO76095 146 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 IFNA10P01566 189 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 METTL15P1P0C7V9 234 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 RAB11AP62491 216 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 CX3CL1P78423 397 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 NHLH2Q02577 135 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 WT1-ASQ06250 92 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 TMEM267Q0VDI3 215 aaPredicted RBP11.05□□□□□ -0.64
CLK3-209ENST00000562670 ATP6V1FQ16864 119 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 CSPG4Q6UVK1 2322 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 BCL6BQ8N143 479 aaPredicted RBP11.05□□□□□ -0.64
CLK3-209ENST00000562670 TMEM86BQ8N661 226 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 UBAC2Q8NBM4 344 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 OR1S2Q8NGQ3 325 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 TMEM170AQ8WVE7 144 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 ARPC1AQ92747 370 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 TMUB1Q9BVT8 246 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 HINT2Q9BX68 163 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 PARD6GQ9BYG4 376 aaPredicted RBP11.05□□□□□ -0.64
CLK3-209ENST00000562670 CYTL1Q9NRR1 136 aa11.05□□□□□ -0.64
CLK3-209ENST00000562670 SOX21Q9Y651 276 aaPredicted RBP11.05□□□□□ -0.64
CLK3-209ENST00000562670 CELSR1Q9NYQ6 3014 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 IGHV7-81A0A0B4J1V7 117 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 MDFIC2A0A1B0GVS7 189 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 BTBD17A6NE02 478 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 RGS13O14921 159 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 TSPAN9O75954 239 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 CST7O76096 145 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 OPN1MWP04001 364 aa11.04□□□□□ -0.64
CLK3-209ENST00000562670 OR8U8P0C7N1 319 aa11.04□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms