RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 CLEC3BP05452 202 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 WT1-ASQ06250 92 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 KLK9Q2XQG4 91 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 OR5H2Q8NGV7 314 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 MOB3AQ96BX8 217 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 PLEKHA2Q9HB19 425 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 COMMD9Q9P000 198 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 KLK9Q9UKQ9 250 aa14.22□□□□□ -0.13
VPS35-202ENST00000561713 TRBV7-1A0A0A6YYK4 115 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 MARCH11A6NNE9 402 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 EIF4EP06730 217 aaKnown RBP14.21□□□□□ -0.13
VPS35-202ENST00000561713 OR13C7P0DN81 318 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 MFAP2P55001 183 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 ERVK-16P61578 105 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 FAM106AQ4KMX7 169 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 GDPD1Q8N9F7 314 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 OR52B4Q8NGK2 314 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 FCAMRQ8WWV6 532 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 S100A16Q96FQ6 103 aaKnown RBP14.21□□□□□ -0.13
VPS35-202ENST00000561713 CXorf58Q96LI9 332 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 HERC2O95714 4834 aa14.21□□□□□ -0.13
VPS35-202ENST00000561713 IGHV3OR16-8A0A075B7F1 116 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 OR2T8A6NH00 312 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 HLA-DMAP28067 261 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 HRH1P35367 487 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 G6PCP35575 357 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 ZNF585BQ52M93 769 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 PHLDA2Q53GA4 152 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 SLC16A13Q7RTY0 426 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 LINC00476Q8WZB0 136 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 AIFM2Q9BRQ8 373 aa14.2□□□□□ -0.14
VPS35-202ENST00000561713 TEX50A0A1B0GTY4 177 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 TGOLN2O43493 480 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 PGLYRP1O75594 196 aaPredicted RBP14.19□□□□□ -0.14
VPS35-202ENST00000561713 KRASP01116 189 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 F2RP25116 425 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 LPAR6P43657 344 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 NCS1P62166 190 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 PLET1Q6UQ28 207 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 CD300LFQ8TDQ1 290 aa14.19□□□□□ -0.14
VPS35-202ENST00000561713 DBX1A6NMT0 343 aa14.18□□□□□ -0.14
VPS35-202ENST00000561713 TRAPPC2P0DI81 140 aa14.18□□□□□ -0.14
VPS35-202ENST00000561713 TRAPPC2BP0DI82 140 aa14.18□□□□□ -0.14
VPS35-202ENST00000561713 TAS2R46P59540 309 aa14.18□□□□□ -0.14
VPS35-202ENST00000561713 SNX29P2Q8IUI4 249 aa14.18□□□□□ -0.14
VPS35-202ENST00000561713 CROCCP3Q8IVE0 287 aa14.18□□□□□ -0.14
VPS35-202ENST00000561713 TMEM190Q8WZ59 177 aa14.18□□□□□ -0.14
VPS35-202ENST00000561713 ZNF207O43670 478 aaKnown RBP14.17□□□□□ -0.14
VPS35-202ENST00000561713 LY6G6CO95867 125 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 NAT1P18440 290 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 PTBP1P26599 531 aaKnown RBP eCLIP14.17□□□□□ -0.14
VPS35-202ENST00000561713 PRSS3P35030 304 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 RNASE12Q5GAN4 147 aaKnown RBP14.17□□□□□ -0.14
VPS35-202ENST00000561713 SLC25A24Q6NUK1 477 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 UBAC2Q8NBM4 344 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 TSPAN14Q8NG11 270 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 OR1L8Q8NGR8 309 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 DGCR14Q96DF8 476 aaKnown RBP14.17□□□□□ -0.14
VPS35-202ENST00000561713 SRSF8Q9BRL6 282 aaKnown RBP14.17□□□□□ -0.14
VPS35-202ENST00000561713 CHRDL1Q9BU40 450 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 COMMD3Q9UBI1 195 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 UBQLN2Q9UHD9 624 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 OR51B2Q9Y5P1 312 aa14.17□□□□□ -0.14
VPS35-202ENST00000561713 DNAH10Q8IVF4 4471 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 GPR31O00270 319 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 SERPINE2P07093 398 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 DHRS11Q6UWP2 260 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 OR1L6Q8NGR2 347 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 BORCS5Q969J3 196 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 LSM10Q969L4 123 aaKnown RBP14.16□□□□□ -0.14
VPS35-202ENST00000561713 SLC25A46Q96AG3 418 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 GGTLC1Q9BX51 225 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 ZNF436Q9C0F3 470 aaPredicted RBP14.16□□□□□ -0.14
VPS35-202ENST00000561713 VCX3AQ9NNX9 186 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 NDUFA4L2Q9NRX3 87 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 THYN1Q9P016 225 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 UFC1Q9Y3C8 167 aa14.16□□□□□ -0.14
VPS35-202ENST00000561713 F11RQ9Y624 299 aaKnown RBP14.16□□□□□ -0.14
VPS35-202ENST00000561713 A0A087WXM4 84 aa14.15□□□□□ -0.14
VPS35-202ENST00000561713 F8W735 103 aaPredicted RBP14.15□□□□□ -0.14
VPS35-202ENST00000561713 TMEM127O75204 238 aa14.15□□□□□ -0.14
VPS35-202ENST00000561713 VBP1P61758 197 aa14.15□□□□□ -0.14
VPS35-202ENST00000561713 THOC7Q6I9Y2 204 aaKnown RBP14.15□□□□□ -0.14
VPS35-202ENST00000561713 RBPMS2Q6ZRY4 209 aaKnown RBP14.15□□□□□ -0.14
VPS35-202ENST00000561713 LYSMD2Q8IV50 215 aa14.15□□□□□ -0.14
VPS35-202ENST00000561713 CMTM1Q8IZ96 169 aa14.15□□□□□ -0.14
VPS35-202ENST00000561713 VN1R17PQ8TDU5 208 aa14.15□□□□□ -0.14
VPS35-202ENST00000561713 C20orf24Q9BUV8 137 aa14.15□□□□□ -0.14
VPS35-202ENST00000561713 K7EIM0 57 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 SNAPC5O75971 98 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 C8orf88P0DMB2 117 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 OR6F1Q8NGZ6 308 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 GPX8Q8TED1 209 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 SCARB1Q8WTV0 552 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 MARC2Q969Z3 335 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 C21orf62Q9NYP8 219 aa14.14□□□□□ -0.15
VPS35-202ENST00000561713 C15orf61A6NNL5 157 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 HPGDSO60760 199 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 TNFAIP8O95379 198 aa14.13□□□□□ -0.15
VPS35-202ENST00000561713 FGF2P09038 288 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 30.8 ms