RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 TRAV40A0A0B4J280 105 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 PMS2P5A8MQ11 134 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 MOSP00540 346 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 SLC38A11Q08AI6 406 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 THNSL2Q86YJ6 484 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 STPG2Q8N412 459 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 OR1L8Q8NGR8 309 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 EAF1Q96JC9 268 aaPredicted RBP17.04■□□□□ 0.32
CLN3-209ENST00000561689 RNF5Q99942 180 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 GINS3Q9BRX5 216 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 SH3BGRL3Q9H299 93 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 FBXL15Q9H469 300 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 DFFBO76075 338 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 LY86O95711 162 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 RPP30P78346 268 aaKnown RBP17.04■□□□□ 0.32
CLN3-209ENST00000561689 MMDQ15546 238 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 PRSS8Q16651 343 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 LINC01356Q8N9X3 169 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 OR10P1Q8NGE3 313 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 TMEM170AQ8WVE7 144 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 C1orf159Q96HA4 380 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 NDUFA4L2Q9NRX3 87 aa17.04■□□□□ 0.32
CLN3-209ENST00000561689 IGHV1-69DA0A0B4J2H0 117 aa17.03■□□□□ 0.32
CLN3-209ENST00000561689 IGHV1-69P01742 117 aa17.03■□□□□ 0.32
CLN3-209ENST00000561689 LOXL1Q08397 574 aaPredicted RBP17.03■□□□□ 0.32
CLN3-209ENST00000561689 BRD3OSQ6XYD6 125 aa17.03■□□□□ 0.32
CLN3-209ENST00000561689 Q96MF0 132 aa17.03■□□□□ 0.32
CLN3-209ENST00000561689 RFNGQ9Y644 331 aa17.03■□□□□ 0.32
CLN3-209ENST00000561689 TRAV20A0A0B4J274 112 aa17.02■□□□□ 0.32
CLN3-209ENST00000561689 OR8U8P0C7N1 319 aa17.02■□□□□ 0.32
CLN3-209ENST00000561689 EIF5AL1Q6IS14 154 aaKnown RBP17.02■□□□□ 0.32
CLN3-209ENST00000561689 PPP1R27Q86WC6 154 aa17.02■□□□□ 0.32
CLN3-209ENST00000561689 KRTAP1-3Q8IUG1 177 aa17.02■□□□□ 0.32
CLN3-209ENST00000561689 SLC24A4Q8NFF2 622 aa17.02■□□□□ 0.32
CLN3-209ENST00000561689 PLA2G2EQ9NZK7 142 aa17.02■□□□□ 0.32
CLN3-209ENST00000561689 CGB1A6NKQ9 187 aa17.02■□□□□ 0.31
CLN3-209ENST00000561689 IGHV4-38-2P0DP08 117 aa17.02■□□□□ 0.31
CLN3-209ENST00000561689 GNB1P62873 340 aa17.02■□□□□ 0.31
CLN3-209ENST00000561689 PLGLAQ15195 96 aa17.02■□□□□ 0.31
CLN3-209ENST00000561689 HSD17B13Q7Z5P4 300 aaPredicted RBP17.02■□□□□ 0.31
CLN3-209ENST00000561689 MMD2Q8IY49 270 aa17.02■□□□□ 0.31
CLN3-209ENST00000561689 OR2T10Q8NGZ9 312 aa17.02■□□□□ 0.31
CLN3-209ENST00000561689 A0A1B0GW64 132 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 FCN1O00602 326 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 CA2P00918 260 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 ZP3P21754 424 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 RUNX1Q01196 453 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 TNXAQ16473 311 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 FAM120AOSQ5T036 256 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 SLC25A24Q6NUK1 477 aa17.01■□□□□ 0.31
CLN3-209ENST00000561689 ACTL6BO94805 426 aa17■□□□□ 0.31
CLN3-209ENST00000561689 AVPP01185 164 aa17■□□□□ 0.31
CLN3-209ENST00000561689 IFNA5P01569 189 aa17■□□□□ 0.31
CLN3-209ENST00000561689 SPP1P10451 314 aa17■□□□□ 0.31
CLN3-209ENST00000561689 NPY1RP25929 384 aa17■□□□□ 0.31
CLN3-209ENST00000561689 ATP6V0CP27449 155 aa17■□□□□ 0.31
CLN3-209ENST00000561689 ETV3LQ6ZN32 361 aa17■□□□□ 0.31
CLN3-209ENST00000561689 PINX1Q96BK5 328 aaKnown RBP17■□□□□ 0.31
CLN3-209ENST00000561689 NBR2O15453 112 aa17■□□□□ 0.31
CLN3-209ENST00000561689 TGFAP01135 160 aa17■□□□□ 0.31
CLN3-209ENST00000561689 IFNA4P05014 189 aa17■□□□□ 0.31
CLN3-209ENST00000561689 FAM157CP0CG43 387 aa17■□□□□ 0.31
CLN3-209ENST00000561689 ZANQ9Y493 2812 aa16.99■□□□□ 0.31
CLN3-209ENST00000561689 UNC79Q9P2D8 2635 aa16.99■□□□□ 0.31
CLN3-209ENST00000561689 UBE2L5PA0A1B0GUS4 154 aa16.99■□□□□ 0.31
CLN3-209ENST00000561689 SEC11BP0C7V7 166 aa16.99■□□□□ 0.31
CLN3-209ENST00000561689 PRSS57Q6UWY2 283 aa16.99■□□□□ 0.31
CLN3-209ENST00000561689 EIF4E3Q8N5X7 224 aaKnown RBP16.99■□□□□ 0.31
CLN3-209ENST00000561689 RNF141Q8WVD5 230 aa16.99■□□□□ 0.31
CLN3-209ENST00000561689 TMA7Q9Y2S6 64 aaKnown RBP16.99■□□□□ 0.31
CLN3-209ENST00000561689 FASNP49327 2511 aaKnown RBP16.99■□□□□ 0.31
CLN3-209ENST00000561689 GATA3P23771 443 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 RAB11AP62491 216 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 WT1-ASQ06250 92 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 TUSC1Q2TAM9 212 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 NPBQ8NG41 125 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 KIAA1456Q9P272 454 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 FGF16O43320 207 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 FAM106CPP0CH98 169 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 TMEM11P17152 192 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 COMPP49747 757 aaPredicted RBP16.98■□□□□ 0.31
CLN3-209ENST00000561689 SCGB1C1Q8TD33 95 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 TMEM147Q9BVK8 224 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 UQCC1Q9NVA1 299 aa16.98■□□□□ 0.31
CLN3-209ENST00000561689 SOX21Q9Y651 276 aaPredicted RBP16.98■□□□□ 0.31
CLN3-209ENST00000561689 A0A1W2PN81 502 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 NCBP2LA6PVI3 153 aaKnown RBP16.97■□□□□ 0.31
CLN3-209ENST00000561689 NDUFA3O95167 84 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 APELAP0DMC3 54 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 IGHV4-31P0DP07 118 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 BRS3P32247 399 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 CHRNA7P36544 502 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 SNCAP37840 140 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 RPL27AP46776 148 aaKnown RBP16.97■□□□□ 0.31
CLN3-209ENST00000561689 SSBP2P81877 361 aaPredicted RBP16.97■□□□□ 0.31
CLN3-209ENST00000561689 EBI3Q14213 229 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 ATP6V1FQ16864 119 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 LRRC75BQ2VPJ9 315 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 TMEM249Q2WGJ8 235 aa16.97■□□□□ 0.31
CLN3-209ENST00000561689 Q8N6K4 173 aa16.97■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms