RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 HINT2Q9BX68 163 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 QTRT1Q9BXR0 403 aaKnown RBP7.69□□□□□ -1.18
LDLR-214ENST00000560628 HIPK2Q9H2X6 1198 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 SRD5A3Q9H8P0 318 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 VCX3AQ9NNX9 186 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 COMMD3Q9UBI1 195 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 MLXQ9UH92 298 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 KLK9Q9UKQ9 250 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 ANAPC10Q9UM13 185 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 TENM2Q9NT68 2774 aa7.69□□□□□ -1.18
LDLR-214ENST00000560628 RYR3Q15413 4870 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 NAT1P18440 290 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 F2RP25116 425 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 PTBP1P26599 531 aaKnown RBP eCLIP7.68□□□□□ -1.18
LDLR-214ENST00000560628 HRH1P35367 487 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 G6PCP35575 357 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 TAS2R46P59540 309 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 NCS1P62166 190 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 WT1-ASQ06250 92 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 ZNF585BQ52M93 769 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 PHLDA2Q53GA4 152 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 PLET1Q6UQ28 207 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 BTNL8Q6UX41 500 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 TMEM61Q8N0U2 210 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 OR1L8Q8NGR8 309 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 ZNF502Q8TBZ5 544 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 BORCS5Q969J3 196 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 SRSF8Q9BRL6 282 aaKnown RBP7.68□□□□□ -1.18
LDLR-214ENST00000560628 COMMD9Q9P000 198 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 OR51B2Q9Y5P1 312 aa7.68□□□□□ -1.18
LDLR-214ENST00000560628 SMIM31A0A1B0GVY4 71 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 OR2T8A6NH00 312 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 MARCH11A6NNE9 402 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 GPR31O00270 319 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 SNAPC5O75971 98 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 TNFAIP8O95379 198 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 SERPINE2P07093 398 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 MFAP2P55001 183 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 VBP1P61758 197 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 TSPAN5P62079 268 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 SLC16A13Q7RTY0 426 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 SNX29P2Q8IUI4 249 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 CMTM1Q8IZ96 169 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 GDPD1Q8N9F7 314 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 OR52B4Q8NGK2 314 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 SLC25A46Q96AG3 418 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 FUNDC2Q9BWH2 189 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 FXYD6Q9H0Q3 95 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 NDUFA4L2Q9NRX3 87 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 THYN1Q9P016 225 aa7.67□□□□□ -1.18
LDLR-214ENST00000560628 IGHV3OR16-8A0A075B7F1 116 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 LCE6AA0A183 80 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 DBX1A6NMT0 343 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 A8MWP6 167 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 CYB5BO43169 146 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 HPGDSO60760 199 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 RBPMS2Q6ZRY4 209 aaKnown RBP7.66□□□□□ -1.18
LDLR-214ENST00000560628 VN1R17PQ8TDU5 208 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 GPX8Q8TED1 209 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 UFC1Q9Y3C8 167 aa7.66□□□□□ -1.18
LDLR-214ENST00000560628 TGOLN2O43493 480 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 ZNF207O43670 478 aaKnown RBP7.65□□□□□ -1.18
LDLR-214ENST00000560628 APOA1P02647 267 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 FGF2P09038 288 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 C8orf88P0DMB2 117 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 ELK1P19419 428 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 RNASE12Q5GAN4 147 aaKnown RBP7.65□□□□□ -1.18
LDLR-214ENST00000560628 THOC7Q6I9Y2 204 aaKnown RBP7.65□□□□□ -1.18
LDLR-214ENST00000560628 TBC1D26Q86UD7 250 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 UBAC2Q8NBM4 344 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 SCARB1Q8WTV0 552 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 LSM10Q969L4 123 aaKnown RBP7.65□□□□□ -1.18
LDLR-214ENST00000560628 MARC2Q969Z3 335 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 CHRDL1Q9BU40 450 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 C20orf24Q9BUV8 137 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 ZNF436Q9C0F3 470 aaPredicted RBP7.65□□□□□ -1.18
LDLR-214ENST00000560628 MRPL27Q9P0M9 148 aaKnown RBP7.65□□□□□ -1.18
LDLR-214ENST00000560628 PRNDQ9UKY0 176 aa7.65□□□□□ -1.18
LDLR-214ENST00000560628 F11RQ9Y624 299 aaKnown RBP7.65□□□□□ -1.18
LDLR-214ENST00000560628 FAM25AB3EWG3 89 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 FAM25CB3EWG5 89 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 FAM25GB3EWG6 89 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 M0QYG6 137 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 S100GP29377 79 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 ELLP55199 621 aaPredicted RBP7.64□□□□□ -1.19
LDLR-214ENST00000560628 ANKRD55Q3KP44 614 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 LPCAT3Q6P1A2 487 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 HSD17B13Q7Z5P4 300 aaPredicted RBP7.64□□□□□ -1.19
LDLR-214ENST00000560628 OR1L6Q8NGR2 347 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 FKBP11Q9NYL4 201 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 C21orf62Q9NYP8 219 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 UBQLN2Q9UHD9 624 aa7.64□□□□□ -1.19
LDLR-214ENST00000560628 DNAH7Q8WXX0 4024 aa7.63□□□□□ -1.19
LDLR-214ENST00000560628 LOC102724200A0A096LPH7 203 aaPredicted RBP7.63□□□□□ -1.19
LDLR-214ENST00000560628 TRAV25A0A0B4J276 109 aa7.63□□□□□ -1.19
LDLR-214ENST00000560628 F8W735 103 aaPredicted RBP7.63□□□□□ -1.19
LDLR-214ENST00000560628 K7EIM0 57 aa7.63□□□□□ -1.19
LDLR-214ENST00000560628 IGKV1-39P01597 117 aa7.63□□□□□ -1.19
LDLR-214ENST00000560628 IGHV3-48P01763 117 aa7.63□□□□□ -1.19
LDLR-214ENST00000560628 IGKV1D-39P04432 117 aa7.63□□□□□ -1.19
Retrieved 100 of 20,778 RNA–protein pairs in 84.1 ms