RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 C11orf87Q6NUJ2 197 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 ZNF546Q86UE3 836 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 NOXA1Q86UR1 476 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 ZNF429Q86V71 674 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 PPP1R27Q86WC6 154 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 NPBQ8NG41 125 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 OR1L8Q8NGR8 309 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 C17orf50Q8WW18 174 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 CFHR4Q92496 578 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 HINT2Q9BX68 163 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 FOXA2Q9Y261 457 aaPredicted RBP9.37□□□□□ -0.91
LDLR-212ENST00000560467 ZNF257Q9Y2Q1 563 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 NSG2Q9Y328 171 aa9.37□□□□□ -0.91
LDLR-212ENST00000560467 A0A1W2PN81 502 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 CYB5BO43169 146 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 SYNGR2O43760 224 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 SCAF4O95104 1147 aaKnown RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 MBPP02686 304 aaPredicted RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 OPN1MWP04001 364 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 OPN1MW2P0DN77 364 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 OPN1MW3P0DN78 364 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 CD24P25063 80 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 CHRNA7P36544 502 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 SNCAP37840 140 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 HOXA1P49639 335 aaPredicted RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 EIF2B2P49770 351 aaKnown RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 SUB1P53999 127 aaKnown RBP eCLIP9.36□□□□□ -0.91
LDLR-212ENST00000560467 GNB1P62873 340 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 ERHP84090 104 aaKnown RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 ID3Q02535 119 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 TNFRSF9Q07011 255 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 RAB32Q13637 225 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 PRSS8Q16651 343 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 CXorf66Q5JRM2 361 aaPredicted RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 LDLRAD2Q5SZI1 272 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 PRSS54Q6PEW0 395 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 C16orf82Q7Z2V1 217 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 HSD17B13Q7Z5P4 300 aaPredicted RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 PUSL1Q8N0Z8 303 aaKnown RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 DYNAPQ8N1N2 210 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 OR4D5Q8NGN0 318 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 DCUN1D4Q92564 292 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 SLC25A31Q9H0C2 315 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 PLEKHA3Q9HB20 300 aa9.36□□□□□ -0.91
LDLR-212ENST00000560467 HEYLQ9NQ87 328 aaPredicted RBP9.36□□□□□ -0.91
LDLR-212ENST00000560467 C15orf61A6NNL5 157 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 SRRM4A7MD48 611 aaKnown RBP9.35□□□□□ -0.91
LDLR-212ENST00000560467 H3BUX3 64 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 K7EPK0 472 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 CHST1O43916 411 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 SSSCA1O60232 199 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 PITX3O75364 302 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 OR9G9P0C7N8 305 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 P0C879 139 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 SLC25A4P12235 298 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 CAV2P51636 162 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 ATP5IP56385 69 aaPredicted RBP9.35□□□□□ -0.91
LDLR-212ENST00000560467 OR2B8PP59922 312 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 TNXAQ16473 311 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 IZUMO4Q1ZYL8 232 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 C5orf64Q2M2E5 130 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 Q6ZRM9 215 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 STX12Q86Y82 276 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 FAM71E2Q8N5Q1 922 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 DTD1Q8TEA8 209 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 ABHD5Q8WTS1 349 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 WDR89Q96FK6 387 aaPredicted RBP9.35□□□□□ -0.91
LDLR-212ENST00000560467 QTRT1Q9BXR0 403 aaKnown RBP9.35□□□□□ -0.91
LDLR-212ENST00000560467 MAGT1Q9H0U3 335 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 TMEM14BQ9NUH8 114 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 HSPB7Q9UBY9 170 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 MOB4Q9Y3A3 225 aa9.35□□□□□ -0.91
LDLR-212ENST00000560467 HMSDA8MTL9 139 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 DEDDO75618 318 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 OR2F2O95006 317 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 NXPH3O95157 252 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 P2RY1P47900 373 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 TAS2R30P59541 319 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 POLR2GP62487 172 aaKnown RBP eCLIP9.34□□□□□ -0.91
LDLR-212ENST00000560467 RAB11AP62491 216 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 TMEM65Q6PI78 240 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 KLHDC1Q8N7A1 406 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 MRAPQ8TCY5 172 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 AJUBAQ96IF1 538 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 SMIM8Q96KF7 97 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 RBM14Q96PK6 669 aaKnown RBP9.34□□□□□ -0.91
LDLR-212ENST00000560467 SLC25A33Q9BSK2 321 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 FBXL15Q9H469 300 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 RBKSQ9H477 322 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 ZNF430Q9H8G1 570 aaPredicted RBP9.34□□□□□ -0.91
LDLR-212ENST00000560467 PSENENQ9NZ42 101 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 MBD2Q9UBB5 411 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 PAIP2BQ9ULR5 123 aaKnown RBP9.34□□□□□ -0.91
LDLR-212ENST00000560467 TCF19Q9Y242 345 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 RCL1Q9Y2P8 373 aaKnown RBP9.34□□□□□ -0.91
LDLR-212ENST00000560467 STRAPQ9Y3F4 350 aaKnown RBP9.34□□□□□ -0.91
LDLR-212ENST00000560467 WSB1Q9Y6I7 421 aa9.34□□□□□ -0.91
LDLR-212ENST00000560467 DNAH3Q8TD57 4116 aa9.33□□□□□ -0.92
LDLR-212ENST00000560467 A0A0D9SG52 128 aa9.33□□□□□ -0.92
LDLR-212ENST00000560467 A0A0G2JRQ6 117 aa9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.1 ms