RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 C18orf65Q6ZTR6 163 aa16.98■□□□□ 0.31
SNX1-210ENST00000560260 FAM219AQ8IW50 185 aa16.98■□□□□ 0.31
SNX1-210ENST00000560260 OR10W1Q8NGF6 305 aa16.98■□□□□ 0.31
SNX1-210ENST00000560260 OR4A16Q8NH70 328 aa16.98■□□□□ 0.31
SNX1-210ENST00000560260 LSM10Q969L4 123 aaKnown RBP16.98■□□□□ 0.31
SNX1-210ENST00000560260 NDUFA4L2Q9NRX3 87 aa16.98■□□□□ 0.31
SNX1-210ENST00000560260 TCRBV4S1A1TA0A5B7 111 aa16.97■□□□□ 0.31
SNX1-210ENST00000560260 PF4V1P10720 104 aa16.97■□□□□ 0.31
SNX1-210ENST00000560260 KIAA0141Q14154 515 aaPredicted RBP16.97■□□□□ 0.31
SNX1-210ENST00000560260 OR5M8Q8NGP6 311 aa16.97■□□□□ 0.31
SNX1-210ENST00000560260 OR1L8Q8NGR8 309 aa16.97■□□□□ 0.31
SNX1-210ENST00000560260 CACNG5Q9UF02 275 aa16.97■□□□□ 0.31
SNX1-210ENST00000560260 A0A1W2PRX2 142 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 ST8SIA3O43173 380 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 RBMXL2O75526 392 aaKnown RBP16.96■□□□□ 0.31
SNX1-210ENST00000560260 DUS4LO95620 317 aaKnown RBP16.96■□□□□ 0.31
SNX1-210ENST00000560260 REG1AP05451 166 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 TRAPPC2P0DI81 140 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 TRAPPC2BP0DI82 140 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 DEFA5Q01523 94 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 AARDQ4LEZ3 155 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 KHDC1LQ5JSQ8 128 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 ZNF429Q86V71 674 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 TTC9CQ8N5M4 171 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 OR5B3Q8NH48 314 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 TMEM68Q96MH6 324 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 PALMDQ9NP74 551 aa16.96■□□□□ 0.31
SNX1-210ENST00000560260 DUXBA0A1W2PPF3 345 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 PRH1P02810 166 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 RPL23AP62750 156 aaKnown RBP16.96■□□□□ 0.3
SNX1-210ENST00000560260 WT1-ASQ06250 92 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 NSUN5P1Q3KNT7 163 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 SPINK9Q5DT21 86 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 CXorf66Q5JRM2 361 aaPredicted RBP16.96■□□□□ 0.3
SNX1-210ENST00000560260 NDUFA11Q86Y39 141 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 MS4A10Q96PG2 267 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 HINT2Q9BX68 163 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 COA4Q9NYJ1 87 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 ZNF257Q9Y2Q1 563 aa16.96■□□□□ 0.3
SNX1-210ENST00000560260 TRRAPQ9Y4A5 3859 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 NPIPB5A8MRT5 1133 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 ADAP1O75689 374 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 CTRB1P17538 263 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 RAB9AP51151 201 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 HSPE1P61604 102 aaKnown RBP16.95■□□□□ 0.3
SNX1-210ENST00000560260 PRCDQ00LT1 54 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 CTRB2Q6GPI1 263 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 MITD1Q8WV92 249 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 FKBP11Q9NYL4 201 aa16.95■□□□□ 0.3
SNX1-210ENST00000560260 TSSC4Q9Y5U2 329 aaPredicted RBP16.95■□□□□ 0.3
SNX1-210ENST00000560260 CRYGCP07315 174 aa16.94■□□□□ 0.3
SNX1-210ENST00000560260 HOXB5P09067 269 aa16.94■□□□□ 0.3
SNX1-210ENST00000560260 PSMB6P28072 239 aa16.94■□□□□ 0.3
SNX1-210ENST00000560260 THOC7Q6I9Y2 204 aaKnown RBP16.94■□□□□ 0.3
SNX1-210ENST00000560260 PLET1Q6UQ28 207 aa16.94■□□□□ 0.3
SNX1-210ENST00000560260 COQ8AQ8NI60 647 aa16.94■□□□□ 0.3
SNX1-210ENST00000560260 ZNF431Q8TF32 576 aaPredicted RBP16.94■□□□□ 0.3
SNX1-210ENST00000560260 SRSF8Q9BRL6 282 aaKnown RBP16.94■□□□□ 0.3
SNX1-210ENST00000560260 GNB4Q9HAV0 340 aa16.94■□□□□ 0.3
SNX1-210ENST00000560260 INMT-MINDY4F8WBC2 141 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 H3BUA1 57 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 IL5P05113 134 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 SULT1A3P0DMM9 295 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 SULT1A4P0DMN0 295 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 DCTN2Q13561 401 aaKnown RBP16.93■□□□□ 0.3
SNX1-210ENST00000560260 GGNBP1Q5YKI7 109 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 C11orf87Q6NUJ2 197 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 MARVELD1Q9BSK0 173 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 ZNF355PQ9NSJ1 428 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 DMRT1Q9Y5R6 373 aa16.93■□□□□ 0.3
SNX1-210ENST00000560260 CMYA5Q8N3K9 4069 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 MPTX1A8MV57 137 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 NXPH3O95157 252 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 BRI3O95415 125 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 TSPAN15O95858 294 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 PTTG1O95997 202 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 OR13C7P0DN81 318 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 TPPP2P59282 170 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 SMCO1Q147U7 214 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 TMEM65Q6PI78 240 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 ZNF491Q8N8L2 437 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 FANCD2OSQ96PS1 177 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 CTNNBIP1Q9NSA3 81 aaPredicted RBP16.92■□□□□ 0.3
SNX1-210ENST00000560260 ZFP57Q9NU63 452 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 TMED3Q9Y3Q3 217 aa16.92■□□□□ 0.3
SNX1-210ENST00000560260 VWFP04275 2813 aa16.91■□□□□ 0.3
SNX1-210ENST00000560260 PITX3O75364 302 aa16.91■□□□□ 0.3
SNX1-210ENST00000560260 TRGV3P03979 118 aa16.91■□□□□ 0.3
SNX1-210ENST00000560260 KLHL30-AS1Q8NEE0 82 aa16.91■□□□□ 0.3
SNX1-210ENST00000560260 TRBV9A0A0B4J1U6 114 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 IFNA17P01571 189 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 CDX1P47902 265 aaPredicted RBP16.9■□□□□ 0.3
SNX1-210ENST00000560260 MFAP2P55001 183 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 KLK9Q2XQG4 91 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 PDLIM3Q53GG5 364 aaPredicted RBP16.9■□□□□ 0.3
SNX1-210ENST00000560260 C8orf86Q6ZUL3 223 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 SLA2Q9H6Q3 261 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 PLEKHA3Q9HB20 300 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 KLK9Q9UKQ9 250 aa16.9■□□□□ 0.3
SNX1-210ENST00000560260 PIGBOS1A0A0B4J2F0 54 aa16.89■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms