RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 M0QZ24 198 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 IFNA17P01571 189 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 IGLV1-40P01703 118 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 P0C879 139 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 CD28P10747 220 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 EGR2P11161 476 aaPredicted RBP7.9□□□□□ -1.14
USP3-216ENST00000559873 PPIFP30405 207 aaKnown RBP7.9□□□□□ -1.14
USP3-216ENST00000559873 HSPE1P61604 102 aaKnown RBP7.9□□□□□ -1.14
USP3-216ENST00000559873 PRCDQ00LT1 54 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 RGS21Q2M5E4 152 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 C2orf68Q2NKX9 166 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 C19orf54Q5BKX5 351 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 NDUFA11Q86Y39 141 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 RNF152Q8N8N0 203 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 C11orf44Q8N8P7 122 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 ZNF431Q8TF32 576 aaPredicted RBP7.9□□□□□ -1.14
USP3-216ENST00000559873 PRR13Q9NZ81 148 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 CACNG5Q9UF02 275 aa7.9□□□□□ -1.14
USP3-216ENST00000559873 FBN1P35555 2871 aaKnown RBP7.9□□□□□ -1.15
USP3-216ENST00000559873 A0A0G2JRQ6 117 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 TEX50A0A1B0GTY4 177 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 A0A1B0GU03 582 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 NUDT19A8MXV4 375 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 TEX22C9J3V5 150 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 BRI3O95415 125 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 TRGV3P03979 118 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 IL5P05113 134 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 APELAP0DMC3 54 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 SLC25A6P12236 298 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 DEFA4P12838 97 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 HIST1H1BP16401 226 aaKnown RBP7.89□□□□□ -1.15
USP3-216ENST00000559873 PSMB8P28062 276 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 HOXA1P49639 335 aaPredicted RBP7.89□□□□□ -1.15
USP3-216ENST00000559873 TPPP2P59282 170 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 CD83Q01151 205 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 SMCO1Q147U7 214 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 ANKRD55Q3KP44 614 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 AARDQ4LEZ3 155 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 NMSQ5H8A3 153 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 LYZL2Q7Z4W2 148 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 TTC9CQ8N5M4 171 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 OR4F17Q8NGA8 305 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 OR1L6Q8NGR2 347 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 OR52E5Q8NH55 327 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 OR1S1Q8NH92 325 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 MITD1Q8WV92 249 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 GPR146Q96CH1 333 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 OR4F4Q96R69 305 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 CITED2Q99967 270 aaPredicted RBP7.89□□□□□ -1.15
USP3-216ENST00000559873 MARVELD1Q9BSK0 173 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 NDUFA4L2Q9NRX3 87 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 THYN1Q9P016 225 aa7.89□□□□□ -1.15
USP3-216ENST00000559873 A0A0B4J293 547 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 A0A0G2JLM5 398 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 IGLC7A0M8Q6 106 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 HMX3A6NHT5 357 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 FAM223BA6NKX1 122 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 FAM90A26D6RGX4 464 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 ST8SIA3O43173 380 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 HOXB5P09067 269 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 OR13C7P0DN81 318 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 MYOD1P15172 320 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 PSMB6P28072 239 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 RAB9AP51151 201 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 SPCS3P61009 180 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 RPL23AP62750 156 aaKnown RBP7.88□□□□□ -1.15
USP3-216ENST00000559873 ERHP84090 104 aaKnown RBP7.88□□□□□ -1.15
USP3-216ENST00000559873 IZUMO4Q1ZYL8 232 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 FAM209BQ5JX69 171 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 ASPHD1Q5U4P2 390 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 C10orf99Q6UWK7 81 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 FAM223AQ8IWN6 122 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 C12orf45Q8N5I9 185 aaPredicted RBP7.88□□□□□ -1.15
USP3-216ENST00000559873 OR5T1Q8NG75 326 aa7.88□□□□□ -1.15
USP3-216ENST00000559873 TENM1Q9UKZ4 2725 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 C13orf42A0A1B0GVH6 325 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 CEBPZOSA8MTT3 80 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 SNRPGP15A8MWD9 76 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 INS-IGF2F8WCM5 200 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 SOX15O60248 233 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 LY86O95711 162 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 RPLP1P05386 114 aaKnown RBP7.87□□□□□ -1.15
USP3-216ENST00000559873 CRYGCP07315 174 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 AREGP15514 252 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 CTRB1P17538 263 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 SNCAP37840 140 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 SUB1P53999 127 aaKnown RBP eCLIP7.87□□□□□ -1.15
USP3-216ENST00000559873 KRTAP10-3P60369 221 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 GGNBP1Q5YKI7 109 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 CTRB2Q6GPI1 263 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 KLHL30-AS1Q8NEE0 82 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 OR52B4Q8NGK2 314 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 USMG5Q96IX5 58 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 UBE2E2Q96LR5 201 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 SEC22CQ9BRL7 303 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 HIPK2Q9H2X6 1198 aa7.87□□□□□ -1.15
USP3-216ENST00000559873 TET2Q6N021 2002 aaPredicted RBP7.86□□□□□ -1.15
USP3-216ENST00000559873 A0A1B0GW64 132 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 A0A1W2PRX2 142 aa7.86□□□□□ -1.15
USP3-216ENST00000559873 CGB1A6NKQ9 187 aa7.86□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 50 ms