RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TMEM190Q8WZ59 177 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 GALNT14Q96FL9 552 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 CNBD2Q96M20 576 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 GPHA2Q96T91 129 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 PLEKHA2Q9HB19 425 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 TXNL4BQ9NX01 149 aaKnown RBP6.81□□□□□ -1.32
HDDC3-204ENST00000559834 RHBDL2Q9NX52 303 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 UBQLN2Q9UHD9 624 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 SSR3Q9UNL2 185 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 SACSQ9NZJ4 4579 aa6.81□□□□□ -1.32
HDDC3-204ENST00000559834 DNAH1Q9P2D7 4330 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 TRAV18A0A075B6X5 111 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 A0A0A6YYH2 397 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 TRAV3A0A0B4J244 114 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 SMIM30A4D0T7 59 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 OR2T8A6NH00 312 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 A6NJ64 397 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 SERPINE2P07093 398 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 OR13C7P0DN81 318 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 RPL35AP18077 110 aaKnown RBP6.8□□□□□ -1.32
HDDC3-204ENST00000559834 CBX5P45973 191 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 SCAND1P57086 179 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 FXYD4P59646 89 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 AADACL3Q5VUY0 350 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 GDPD1Q8N9F7 314 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 OR1L8Q8NGR8 309 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 C20orf24Q9BUV8 137 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 DIABLOQ9NR28 239 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 TMEM140Q9NV12 185 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 C21orf62Q9NYP8 219 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 COMMD9Q9P000 198 aa6.8□□□□□ -1.32
HDDC3-204ENST00000559834 TEX50A0A1B0GTY4 177 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 C15orf62A8K5M9 175 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 SNAPC5O75971 98 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 IFNA4P05014 189 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 EWSR1Q01844 656 aaKnown RBP eCLIP6.79□□□□□ -1.32
HDDC3-204ENST00000559834 UBE2UQ5VVX9 321 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 LGALS9CQ6DKI2 356 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 SFXN4Q6P4A7 337 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 GVQW1Q8N7I0 195 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 TSPAN14Q8NG11 270 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 OR5AP2Q8NGF4 316 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 OR10W1Q8NGF6 305 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 OR51H1Q8NH63 302 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 LGALS14Q8TCE9 139 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 PHLDA1Q8WV24 401 aaPredicted RBP6.79□□□□□ -1.32
HDDC3-204ENST00000559834 FCGR1BQ92637 280 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 LSM10Q969L4 123 aaKnown RBP6.79□□□□□ -1.32
HDDC3-204ENST00000559834 TMEM56Q96MV1 263 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 CMTM3Q96MX0 182 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 CSTL1Q9H114 145 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 MAP6D1Q9H9H5 199 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 FKBP11Q9NYL4 201 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 ETV7Q9Y603 341 aa6.79□□□□□ -1.32
HDDC3-204ENST00000559834 MPTX1A8MV57 137 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 NUPL2O15504 423 aaKnown RBP6.78□□□□□ -1.32
HDDC3-204ENST00000559834 CD5P06127 495 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 CTSDP07339 412 aaPredicted RBP6.78□□□□□ -1.32
HDDC3-204ENST00000559834 PTHLHP12272 177 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 PSMB9P28065 219 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 SDC2P34741 201 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 GABARAPL2P60520 117 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 HERV-K104P61576 105 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 PAFAH1B2P68402 229 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 RELQ04864 619 aaPredicted RBP6.78□□□□□ -1.32
HDDC3-204ENST00000559834 WT1-ASQ06250 92 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 ODF3L2Q3SX64 289 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 Q56UQ5 140 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 IDNKQ5T6J7 187 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 ZNF773Q6PK81 442 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 ZNF818PQ6ZRF7 136 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 TMEM17Q86X19 198 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 CADM3Q8N126 398 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 UBAC2Q8NBM4 344 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 OR5B3Q8NH48 314 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 SCARB1Q8WTV0 552 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 GATAD1Q8WUU5 269 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 RARRES2Q99969 163 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 HINT2Q9BX68 163 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 MFFQ9GZY8 342 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 NDUFA4L2Q9NRX3 87 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 SMPXQ9UHP9 88 aa6.78□□□□□ -1.32
HDDC3-204ENST00000559834 F11RQ9Y624 299 aaKnown RBP6.78□□□□□ -1.32
HDDC3-204ENST00000559834 CSMD3Q7Z407 3707 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 MARCH11A6NNE9 402 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 TMEM127O75204 238 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 YIF1AO95070 293 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 S1PR2O95136 353 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 KRASP01116 189 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 F2RP25116 425 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 GNRHRP30968 328 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 ADMP35318 185 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 LPAR6P43657 344 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 DHRS11Q6UWP2 260 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 CMTM1Q8IZ96 169 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 SPARTQ8N0X7 666 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 RPP25LQ8N5L8 163 aaKnown RBP6.77□□□□□ -1.33
HDDC3-204ENST00000559834 TMEM116Q8NCL8 245 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 C11orf45Q8TAV5 145 aa6.77□□□□□ -1.33
HDDC3-204ENST00000559834 TSC22D3Q99576 134 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms