RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-223ENST00000556689 H1FOOQ8IZA3 346 aaPredicted RBP9.4□□□□□ -0.9
SHMT2-223ENST00000556689 KIR2DL5AQ8N109 375 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 STPG3Q8N7X2 389 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 KIR2DL5BQ8NHK3 375 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 VSTM2AQ8TAG5 236 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 FCAMRQ8WWV6 532 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 MAFIPQ8WZ33 124 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 RNF183Q96D59 192 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 FYTTD1Q96QD9 318 aaKnown RBP9.4□□□□□ -0.9
SHMT2-223ENST00000556689 OR2A7Q96R45 310 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 MIXL1Q9H2W2 232 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 SCPEP1Q9HB40 452 aa9.4□□□□□ -0.9
SHMT2-223ENST00000556689 MRPL27Q9P0M9 148 aaKnown RBP9.4□□□□□ -0.9
SHMT2-223ENST00000556689 TRBV7-1A0A0A6YYK4 115 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 E7EUB6 86 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 J3QRK9 145 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 ZNF735P0CB33 412 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 DEFA4P12838 97 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 HIST1H1BP16401 226 aaKnown RBP9.39□□□□□ -0.91
SHMT2-223ENST00000556689 GNB3P16520 340 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 PSMB6P28072 239 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 PRSS3P35030 304 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 MAS1LP35410 378 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 ETV6P41212 452 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 AP3S2P59780 193 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 KLK9Q2XQG4 91 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 UNQ9165/PRO28630Q6UXU0 137 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 VKORC1L1Q8N0U8 176 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 C5orf66Q9H5L9 145 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 KLK9Q9UKQ9 250 aa9.39□□□□□ -0.91
SHMT2-223ENST00000556689 TMEM235A6NFC5 223 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 RAB27BO00194 218 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 SULT1C2O00338 296 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 KBTBD11O94819 623 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 AREGP15514 252 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 CTRB1P17538 263 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 ELLP55199 621 aaPredicted RBP9.38□□□□□ -0.91
SHMT2-223ENST00000556689 PLA2G7Q13093 441 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 CDNFQ49AH0 187 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 OR2B11Q5JQS5 317 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 HACD4Q5VWC8 232 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 CTRB2Q6GPI1 263 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 KCTD9Q7L273 389 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 CCDC190Q86UF4 302 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 ZNF645Q8N7E2 425 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 GDPD1Q8N9F7 314 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 TMEM167AQ8TBQ9 72 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 GATAD1Q8WUU5 269 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 CXorf58Q96LI9 332 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 SPAG8Q99932 426 aaPredicted RBP9.38□□□□□ -0.91
SHMT2-223ENST00000556689 CCDC32Q9BV29 185 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 TAS2R8Q9NYW2 309 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 UBQLN2Q9UHD9 624 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 UFC1Q9Y3C8 167 aa9.38□□□□□ -0.91
SHMT2-223ENST00000556689 A0A1B0GW64 132 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 GABARAPH6UMI1 98 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 MFNGO00587 321 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 CTDSPLO15194 276 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 SLC22A5O76082 557 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 MYOD1P15172 320 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 RCVRNP35243 200 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 FAUP35544 74 aaKnown RBP9.37□□□□□ -0.91
SHMT2-223ENST00000556689 RPL30P62888 115 aaKnown RBP9.37□□□□□ -0.91
SHMT2-223ENST00000556689 SSBP1Q04837 148 aaKnown RBP9.37□□□□□ -0.91
SHMT2-223ENST00000556689 LAMTOR1Q6IAA8 161 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 Q6ZS49 121 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 PUSL1Q8N0Z8 303 aaKnown RBP9.37□□□□□ -0.91
SHMT2-223ENST00000556689 OR4S2Q8NH73 311 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 AUNIPQ9H7T9 357 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 RBMX2Q9Y388 322 aaKnown RBP9.37□□□□□ -0.91
SHMT2-223ENST00000556689 VPS13DQ5THJ4 4388 aa9.37□□□□□ -0.91
SHMT2-223ENST00000556689 KIAA1109Q2LD37 5005 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 IGLV11-55A0A075B6I3 123 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 IGHV3-35A0A0C4DH35 117 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 MFSD2BA6NFX1 497 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 TSPAN4O14817 238 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 HLA-DQB1P01920 261 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 RPL35AP18077 110 aaKnown RBP9.36□□□□□ -0.91
SHMT2-223ENST00000556689 DTYMKP23919 212 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 ARPC4P59998 168 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 PLET1Q6UQ28 207 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 SMIM4Q8WVI0 70 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 BORCS5Q969J3 196 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 OR2W1Q9Y3N9 320 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 V9GYH0 126 aa9.36□□□□□ -0.91
SHMT2-223ENST00000556689 IGKV1D-8A0A087WSZ0 117 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 CENPXA8MT69 81 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 HRASP01112 189 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 IGLV2-14P01704 120 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 IFNA4P05014 189 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 REG1AP05451 166 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 CTXN2P0C2S0 81 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 NFYAP23511 347 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-223ENST00000556689 GPR183P32249 361 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 PPP5CP53041 499 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 TAS2R46P59540 309 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 DEFA1P59665 94 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 DEFA3P59666 94 aa9.35□□□□□ -0.91
SHMT2-223ENST00000556689 RNASE12Q5GAN4 147 aaKnown RBP9.35□□□□□ -0.91
SHMT2-223ENST00000556689 NUDCD2Q8WVJ2 157 aa9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 30 ms