RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 ZNF818PQ6ZRF7 136 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 GAPTQ8N292 157 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 RPP25LQ8N5L8 163 aaKnown RBP6.36□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF611Q8N823 705 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 Q8N976 141 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 OR5D13Q8NGL4 314 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 CCL19Q99731 98 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 SLC35D1Q9NTN3 355 aa6.36□□□□□ -1.39
LIMA1-216ENST00000552909 MRPS16Q9Y3D3 137 aaKnown RBP6.36□□□□□ -1.39
LIMA1-216ENST00000552909 A0A0U1RQV5 110 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 CTXND1A0A1B0GTU2 59 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 RNF212BA8MTL3 300 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 HMGB3O15347 200 aaKnown RBP6.35□□□□□ -1.39
LIMA1-216ENST00000552909 OTX1P32242 354 aaPredicted RBP6.35□□□□□ -1.39
LIMA1-216ENST00000552909 PLP2Q04941 152 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 OCIAD2Q56VL3 154 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 SSX8Q7RTT4 187 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 KRTAP1-3Q8IUG1 177 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 TCTEX1D1Q8N7M0 179 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 OR56B2PQ8NGI1 322 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 GATAD1Q8WUU5 269 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 C10orf35Q96D05 121 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 MBD6Q96DN6 1003 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 NUDT11Q96G61 164 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 FOXC2Q99958 501 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 FAM103A1Q9BTL3 118 aaKnown RBP6.35□□□□□ -1.39
LIMA1-216ENST00000552909 CXXC4Q9H2H0 198 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 SLC25A22Q9H936 323 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 OBP2BQ9NPH6 170 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 PSENENQ9NZ42 101 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 RNF24Q9Y225 148 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 TIMM9Q9Y5J7 89 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 PIGBOS1A0A0B4J2F0 54 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 MDFIC2A0A1B0GVS7 189 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 C5orf49A4QMS7 147 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 H0Y980 276 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 TMPRSS2O15393 492 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 PAGE4O60829 102 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 NDUFS7O75251 213 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 IGKV1D-33P01593 117 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 IGKV1-33P01594 117 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 SLC25A6P12236 298 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 CBLN1P23435 193 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 TSPOP30536 169 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 S100A7P31151 101 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 RPS20P60866 119 aaKnown RBP6.35□□□□□ -1.39
LIMA1-216ENST00000552909 ARL16Q0P5N6 197 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 Q0VG73 95 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 MALLQ13021 153 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 VAMP3Q15836 100 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 SNAI3Q3KNW1 292 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 KRTAP27-1Q3LI81 207 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 PIGYQ3MUY2 71 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 LDLRAD2Q5SZI1 272 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 C20orf204Q6ZNR8 217 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 WFDC11Q8NEX6 87 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 TAF15Q92804 592 aaKnown RBP eCLIP6.35□□□□□ -1.39
LIMA1-216ENST00000552909 SPSB1Q96BD6 273 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 PERPQ96FX8 193 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 GPHA2Q96T91 129 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 MRPL18Q9H0U6 180 aaKnown RBP6.35□□□□□ -1.39
LIMA1-216ENST00000552909 CST9LQ9H4G1 147 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 CDC42EP3Q9UKI2 254 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 RPH3ALQ9UNE2 315 aa6.35□□□□□ -1.39
LIMA1-216ENST00000552909 RBM7Q9Y580 266 aaKnown RBP6.35□□□□□ -1.39
LIMA1-216ENST00000552909 NF1P21359 2839 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 IGHV1-69-2A0A0G2JMI3 117 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 A0A0G2JRQ6 117 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 UBE2L5PA0A1B0GUS4 154 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 KIAA1324LA8MWY0 1029 aaPredicted RBP6.34□□□□□ -1.39
LIMA1-216ENST00000552909 C11orf94C9JXX5 98 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 SYNGR2O43760 224 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF253O75346 499 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 GPX1P07203 203 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 IAPPP10997 89 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 KITLGP21583 273 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 HAPLN4Q86UW8 402 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 OSR2Q8N2R0 312 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 OR10V1Q8NGI7 309 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 NANOS1Q8WY41 292 aaKnown RBP6.34□□□□□ -1.39
LIMA1-216ENST00000552909 OR5P3Q8WZ94 311 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 GPR146Q96CH1 333 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 SFRP2Q96HF1 295 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 OR4C12Q96R67 309 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 ZNF442Q9H7R0 627 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 TBL2Q9Y4P3 447 aaKnown RBP6.34□□□□□ -1.39
LIMA1-216ENST00000552909 RNF114Q9Y508 228 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 ATP23Q9Y6H3 246 aa6.34□□□□□ -1.39
LIMA1-216ENST00000552909 TRAV9-1A0A075B6T8 112 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 OVOL3O00110 214 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 SH2D1BO14796 132 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 PDE6DO43924 150 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 PDCD6O75340 191 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 CRYAAP02489 173 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 CNN3Q15417 329 aaKnown RBP6.34□□□□□ -1.4
LIMA1-216ENST00000552909 Q6ZPA2 131 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 FAM169BQ8N8A8 192 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 OR10G9Q8NGN4 311 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 OR10G7Q8NGN6 311 aa6.34□□□□□ -1.4
LIMA1-216ENST00000552909 OR5B3Q8NH48 314 aa6.34□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms