RNA–Protein interactions for RNA: ENST00000549064.1

LIMA1-204, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 648 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-204ENST00000549064 WARS2Q9UGM6 360 aaKnown RBP4.67□□□□□ -1.66
LIMA1-204ENST00000549064 PEX16Q9Y5Y5 336 aa4.67□□□□□ -1.66
LIMA1-204ENST00000549064 TRBV5-5A0A0J9YX44 114 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 SCGB2A1O75556 95 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 IFNA10P01566 189 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 AMBPP02760 352 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 SCTP09683 121 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 ANXA8P13928 327 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 MS4A2Q01362 244 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 MED21Q13503 144 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 LY6G6FQ5SQ64 297 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 SLC25A30Q5SVS4 291 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 C12orf73Q69YU5 71 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 SLC25A24Q6NUK1 477 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 CLEC19AQ6UXS0 136 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 COX8CQ7Z4L0 72 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 UBE2DNLQ8IWF7 75 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 DEFB107AQ8IZN7 70 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 Q8NAQ8 132 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 SRSF12Q8WXF0 261 aaKnown RBP4.66□□□□□ -1.66
LIMA1-204ENST00000549064 GALMQ96C23 342 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 CPNE2Q96FN4 548 aaPredicted RBP4.66□□□□□ -1.66
LIMA1-204ENST00000549064 C18orf15Q96N68 181 aa4.66□□□□□ -1.66
LIMA1-204ENST00000549064 EXOSC1Q9Y3B2 195 aaKnown RBP4.66□□□□□ -1.66
LIMA1-204ENST00000549064 DEFB131BA0A096LNP1 70 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 IGHV3-35A0A0C4DH35 117 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 SRRM4A7MD48 611 aaKnown RBP4.65□□□□□ -1.67
LIMA1-204ENST00000549064 J3QLW9 94 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 SC5DO75845 299 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 C8orf88P0DMB2 117 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 GTF2F2P13984 249 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF19P17023 458 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF93P35789 620 aaPredicted RBP4.65□□□□□ -1.67
LIMA1-204ENST00000549064 DAPP51397 102 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 HERV-K104P63124 156 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 HMGN3Q15651 99 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 TNXAQ16473 311 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 FAM106AQ4KMX7 169 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 C10orf55Q5SWW7 151 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 DDI2Q5TDH0 399 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 DHRS11Q6UWP2 260 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 IDO2Q6ZQW0 420 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 DHFR2Q86XF0 187 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 PDPNQ86YL7 162 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 NECAP1Q8NC96 275 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 SECTM1Q8WVN6 248 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 C4orf36Q96KX1 117 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 NEDD4LQ96PU5 975 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 S100A13Q99584 98 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 PDCD1LG2Q9BQ51 273 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 SULT4A1Q9BR01 284 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 AGMATQ9BSE5 352 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 KRTAP9-4Q9BYQ2 154 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 PRRG3Q9BZD7 231 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 BANF2Q9H503 90 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 TMEM231Q9H6L2 316 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 ISG20L2Q9H9L3 353 aaKnown RBP4.65□□□□□ -1.67
LIMA1-204ENST00000549064 SPACA1Q9HBV2 294 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 CELA1Q9UNI1 258 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 ETV7Q9Y603 341 aa4.65□□□□□ -1.67
LIMA1-204ENST00000549064 IGLV9-49A0A0B4J1Y8 123 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 DAPL1A0PJW8 107 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 F8WDY8 70 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 CLN5O75503 358 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 GPX5O75715 221 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 CA1P00915 261 aaPredicted RBP4.64□□□□□ -1.67
LIMA1-204ENST00000549064 APOA2P02652 100 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 CD74P04233 296 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 GAGE5Q13069 117 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 GAGE6Q13070 117 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 TMEM187Q14656 261 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 SPATA12Q7Z6I5 190 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 CANT1Q8WVQ1 401 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 ACOT12Q8WYK0 555 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 FCGR1BQ92637 280 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 MRPL53Q96EL3 112 aaKnown RBP4.64□□□□□ -1.67
LIMA1-204ENST00000549064 CXorf58Q96LI9 332 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 NDUFAF3Q9BU61 184 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 MRPL27Q9P0M9 148 aaKnown RBP4.64□□□□□ -1.67
LIMA1-204ENST00000549064 OR1A1Q9P1Q5 309 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 RABL2BQ9UNT1 228 aa4.64□□□□□ -1.67
LIMA1-204ENST00000549064 RPL36Q9Y3U8 105 aaKnown RBP4.64□□□□□ -1.67
LIMA1-204ENST00000549064 OR4C46A6NHA9 309 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 SNURFLB1AK76 121 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 M0R1X1 148 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 ZNF780AO75290 641 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-204ENST00000549064 CA11O75493 328 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 FAM107AO95990 144 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 IFNA21P01568 189 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 IFNA17P01571 189 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 CTSDP07339 412 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-204ENST00000549064 RPSAP08865 295 aaKnown RBP4.63□□□□□ -1.67
LIMA1-204ENST00000549064 RPA2P15927 270 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 FUT3P21217 361 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 MAP2K4P45985 399 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 TFPI2P48307 235 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 HOXA1P49639 335 aaPredicted RBP4.63□□□□□ -1.67
LIMA1-204ENST00000549064 PRSS8Q16651 343 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 C12orf74Q32Q52 190 aa4.63□□□□□ -1.67
LIMA1-204ENST00000549064 Q5VSD8 79 aa4.63□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms