RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 TFPI2P48307 235 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 RELQ04864 619 aaPredicted RBP12.39□□□□□ -0.43
VPS29-204ENST00000548259 CATR1Q13166 79 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 SPAG16Q8N0X2 631 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 UBAC2Q8NBM4 344 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 SMPXQ9UHP9 88 aa12.39□□□□□ -0.43
VPS29-204ENST00000548259 TRAV10A0A0B4J240 114 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 CGB1A6NKQ9 187 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 IFITM5A6NNB3 132 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 DEFB4AO15263 64 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 ZNF207O43670 478 aaKnown RBP12.38□□□□□ -0.43
VPS29-204ENST00000548259 TRAPPC2P0DI81 140 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 TRAPPC2BP0DI82 140 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 OR13C7P0DN81 318 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 ARPC4P59998 168 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 EIF4EBP1Q13541 118 aaPredicted RBP12.38□□□□□ -0.43
VPS29-204ENST00000548259 RCN1Q15293 331 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 MSMO1Q15800 293 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 CDNFQ49AH0 187 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 Q56UQ5 140 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 HACD4Q5VWC8 232 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 TMEM116Q8NCL8 245 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 ZBTB34Q8NCN2 500 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 RNF2Q99496 336 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 RHPN1-AS1Q9BWJ2 59 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 VCXQ9H320 206 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 ETV7Q9Y603 341 aa12.38□□□□□ -0.43
VPS29-204ENST00000548259 PRSS29PA6NIE9 313 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 UPK2O00526 184 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 NUPL2O15504 423 aaKnown RBP12.37□□□□□ -0.43
VPS29-204ENST00000548259 SCGNO76038 276 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 YIF1AO95070 293 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 HPRT1P00492 218 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 EIF4EP06730 217 aaKnown RBP12.37□□□□□ -0.43
VPS29-204ENST00000548259 SERPINE2P07093 398 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 MYL9P24844 172 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 BRWD1-AS2P59051 145 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 FABP5Q01469 135 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 MLLT11Q13015 90 aaPredicted RBP12.37□□□□□ -0.43
VPS29-204ENST00000548259 TMEM41BQ5BJD5 291 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 DMBX1Q8NFW5 382 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 TPRKBQ9Y3C4 175 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 VPS13DQ5THJ4 4388 aa12.37□□□□□ -0.43
VPS29-204ENST00000548259 IGKV3-7A0A075B6H7 116 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 IGHV3OR16-8A0A075B7F1 116 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 TRAV1-2A0A0B4J238 106 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 IGHV7-4-1A0A0J9YVY3 117 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 C15orf61A6NNL5 157 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 TNFSF12O43508 249 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 GNG2P59768 71 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 ERVK-16P61578 105 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 POU2AF1Q16633 256 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 OR1L8Q8NGR8 309 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 SECTM1Q8WVN6 248 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 CHRDL1Q9BU40 450 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 ANXA10Q9UJ72 324 aa12.36□□□□□ -0.43
VPS29-204ENST00000548259 CHEK1O14757 476 aa12.35□□□□□ -0.43
VPS29-204ENST00000548259 CASQ2O14958 399 aaPredicted RBP12.35□□□□□ -0.43
VPS29-204ENST00000548259 DFFBO76075 338 aa12.35□□□□□ -0.43
VPS29-204ENST00000548259 ZNF124Q15973 351 aa12.35□□□□□ -0.43
VPS29-204ENST00000548259 OR10W1Q8NGF6 305 aa12.35□□□□□ -0.43
VPS29-204ENST00000548259 SCARB1Q8WTV0 552 aa12.35□□□□□ -0.43
VPS29-204ENST00000548259 LSM10Q969L4 123 aaKnown RBP12.35□□□□□ -0.43
VPS29-204ENST00000548259 RNF126Q9BV68 326 aa12.35□□□□□ -0.43
VPS29-204ENST00000548259 TMEM140Q9NV12 185 aa12.35□□□□□ -0.43
VPS29-204ENST00000548259 F11RQ9Y624 299 aaKnown RBP12.35□□□□□ -0.43
VPS29-204ENST00000548259 IGHV4-4A0A075B6R2 117 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 TRAV14DV4A0A0A6YYC5 116 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 A0A1B0GVY2 172 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 DNASE2O00115 360 aaPredicted RBP12.34□□□□□ -0.43
VPS29-204ENST00000548259 SULT1C2O00338 296 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 P0DMU3 169 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 FAM231AP0DMU4 169 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 FAM231CP0DMU5 169 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 MIFP14174 115 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 RAB3BP20337 219 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 HLA-DMBP28068 263 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 PVRIGQ6DKI7 326 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 STHQ8IWL8 128 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 GBGT1Q8N5D6 347 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 BORCS5Q969J3 196 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 GPHA2Q96T91 129 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 MGLLQ99685 303 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 GINS3Q9BRX5 216 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 HINT2Q9BX68 163 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 PLEKHA2Q9HB19 425 aa12.34□□□□□ -0.43
VPS29-204ENST00000548259 ELF5Q9UKW6 265 aaPredicted RBP12.34□□□□□ -0.43
VPS29-204ENST00000548259 IGHV3-21A0A0B4J1V1 117 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 TRAV3A0A0B4J244 114 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 RGS10O43665 173 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 OR10A3P58181 314 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 OR13F1Q8NGS4 319 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 NUDCD2Q8WVJ2 157 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 CCL28Q9NRJ3 127 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 COMMD9Q9P000 198 aa12.33□□□□□ -0.44
VPS29-204ENST00000548259 SNAPC5O75971 98 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 FCGR2CP31995 323 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 WT1-ASQ06250 92 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 TCF24Q7RTU0 167 aa12.32□□□□□ -0.44
VPS29-204ENST00000548259 POM121L12Q8N7R1 296 aa12.32□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms