RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 ZNF729A6NN14 1252 aaPredicted RBP13.06□□□□□ -0.32
CUX1-211ENST00000546411 CDX1P47902 265 aaPredicted RBP13.06□□□□□ -0.32
CUX1-211ENST00000546411 SCO2A0A1W2PP80 73 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 DUTP33316 252 aaKnown RBP13.06□□□□□ -0.32
CUX1-211ENST00000546411 CEACAM3P40198 252 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 COQ2Q96H96 371 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 WASHC3Q9Y3C0 194 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 LINC00473A8K010 186 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 TMEM250H0YL14 139 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 SLC31A2O15432 143 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 CBLN1P23435 193 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 GCHFRP30047 84 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 ERVFRD-1P60508 538 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 SMIM15Q7Z3B0 74 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 CD177Q8N6Q3 437 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 EAF1Q96JC9 268 aaPredicted RBP13.06□□□□□ -0.32
CUX1-211ENST00000546411 MRPL20Q9BYC9 149 aaKnown RBP13.06□□□□□ -0.32
CUX1-211ENST00000546411 TNFRSF19Q9NS68 423 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 COA4Q9NYJ1 87 aa13.06□□□□□ -0.32
CUX1-211ENST00000546411 PGPA6NDG6 321 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 MYOD1P15172 320 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 SDF2L1Q9HCN8 221 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 TRAV3A0A0B4J244 114 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 DKK1O94907 266 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 SCGB2A2Q13296 93 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 OR4C13Q8NGP0 309 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 CHRDL1Q9BU40 450 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 GGACTQ9BVM4 153 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 CXorf65A6NEN9 183 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 LYPD6Q86Y78 171 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 ELOVL1Q9BW60 279 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 ARHGAP21Q5T5U3 1957 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 IGHV1-69-2A0A0G2JMI3 117 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 HIST1H1BP16401 226 aaKnown RBP13.05□□□□□ -0.32
CUX1-211ENST00000546411 HTR1DP28221 377 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 ZNF600Q6ZNG1 722 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 CYP2G1PQ6ZSU1 146 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 IMMP2LQ96T52 175 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 TMEM106BQ9NUM4 274 aa13.05□□□□□ -0.32
CUX1-211ENST00000546411 AARDQ4LEZ3 155 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 ASCL5Q7RTU5 278 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 OR1P1Q8NH06 330 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 PERPQ96FX8 193 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 SCNM1Q9BWG6 230 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 DNAJC4Q9NNZ3 241 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 AMMECR1Q9Y4X0 333 aaPredicted RBP13.04□□□□□ -0.32
CUX1-211ENST00000546411 C19orf67A6NJJ6 358 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 HYPMO75409 117 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 CEACAM1P13688 526 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 KHDC1LQ5JSQ8 128 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 IBA57Q5T440 356 aaKnown RBP13.04□□□□□ -0.32
CUX1-211ENST00000546411 FAM90A1Q86YD7 464 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 MUC15Q8N387 334 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 EML6Q6ZMW3 1958 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 J3KRW8 73 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 P01737 135 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 CXCL1P09341 107 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 FAM209BQ5JX69 171 aa13.04□□□□□ -0.32
CUX1-211ENST00000546411 PPIAL4CA0A0B4J2A2 164 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 ACAA1P09110 424 aaPredicted RBP13.03□□□□□ -0.32
CUX1-211ENST00000546411 C1QTNF9P0C862 333 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 PPIAL4GP0DN37 164 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 RPL23P62829 140 aaKnown RBP13.03□□□□□ -0.32
CUX1-211ENST00000546411 ECSCRQ19T08 205 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 MIR17HGQ75NE6 70 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 HSPB9Q9BQS6 159 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 ANAPC10Q9UM13 185 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 SRRM5B3KS81 715 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 C8orf88P0DMB2 117 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 CD24P25063 80 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 CTAG1AP78358 180 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 ZNF585BQ52M93 769 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 C10orf55Q5SWW7 151 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 WDR86Q86TI4 376 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 CLEC5AQ9NY25 188 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 HSPB7Q9UBY9 170 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 TNCP24821 2201 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 IGLV3-1P01715 115 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 LYL1P12980 280 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 LHFPL4Q7Z7J7 247 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 PNKDQ8N490 385 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 OR9G1Q8NH87 305 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 TBX15Q96SF7 602 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 NDFIP1Q9BT67 221 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 ZNRD1Q9P1U0 126 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 PIEZO1Q92508 2521 aa13.03□□□□□ -0.32
CUX1-211ENST00000546411 C17orf100A8MU93 164 aa13.02□□□□□ -0.32
CUX1-211ENST00000546411 GFI1BQ5VTD9 330 aa13.02□□□□□ -0.32
CUX1-211ENST00000546411 PRNTQ86SH4 94 aa13.02□□□□□ -0.32
CUX1-211ENST00000546411 FAM57AQ8TBR7 257 aa13.02□□□□□ -0.32
CUX1-211ENST00000546411 SFRP2Q96HF1 295 aa13.02□□□□□ -0.32
CUX1-211ENST00000546411 DLL1O00548 723 aa13.02□□□□□ -0.32
CUX1-211ENST00000546411 OR10W1Q8NGF6 305 aa13.02□□□□□ -0.32
CUX1-211ENST00000546411 IGHV1-46P01743 117 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 MC5RP33032 325 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 ELOBQ15370 118 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 CENPWQ5EE01 88 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 DIRC2Q96SL1 478 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 PLSCR4Q9NRQ2 329 aa13.02□□□□□ -0.33
CUX1-211ENST00000546411 RNF115Q9Y4L5 304 aa13.02□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 35.2 ms