RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 ZNF430Q9H8G1 570 aaPredicted RBP7.58□□□□□ -1.2
YBX3-215ENST00000544504 VPREB3Q9UKI3 123 aa7.58□□□□□ -1.2
YBX3-215ENST00000544504 NSG2Q9Y328 171 aa7.58□□□□□ -1.2
YBX3-215ENST00000544504 LSM5Q9Y4Y9 91 aaKnown RBP7.58□□□□□ -1.2
YBX3-215ENST00000544504 WSB1Q9Y6I7 421 aa7.58□□□□□ -1.2
YBX3-215ENST00000544504 TRAV3A0A0B4J244 114 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 HMSDA8MTL9 139 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 TRIM77I1YAP6 450 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 K7EPK0 472 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 CNIH1O95406 144 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 HNRNPCP07910 306 aaKnown RBP eCLIP7.57□□□□□ -1.24e-7■□□□□ 9.3
YBX3-215ENST00000544504 LYL1P12980 280 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 C4BPBP20851 252 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 PAX6P26367 422 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 RPL27AP46776 148 aaKnown RBP7.57□□□□□ -1.2
YBX3-215ENST00000544504 HOXA1P49639 335 aaPredicted RBP7.57□□□□□ -1.2
YBX3-215ENST00000544504 PRCDQ00LT1 54 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 TNXAQ16473 311 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 IZUMO4Q1ZYL8 232 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 TUSC1Q2TAM9 212 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 LRRC37A5PQ49AS3 106 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 AWAT1Q58HT5 328 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 CXorf66Q5JRM2 361 aaPredicted RBP7.57□□□□□ -1.2
YBX3-215ENST00000544504 TMEM65Q6PI78 240 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 ZNF562Q6V9R5 426 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 ZNF546Q86UE3 836 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 BCL6BQ8N143 479 aaPredicted RBP7.57□□□□□ -1.2
YBX3-215ENST00000544504 FAM71E2Q8N5Q1 922 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 INO80EQ8NBZ0 244 aaPredicted RBP7.57□□□□□ -1.2
YBX3-215ENST00000544504 PIFOQ8TCI5 191 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 WDR89Q96FK6 387 aaPredicted RBP7.57□□□□□ -1.2
YBX3-215ENST00000544504 RITA1Q96K30 269 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 JMJD8Q96S16 334 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 ZNF747Q9BV97 191 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 QTRT1Q9BXR0 403 aaKnown RBP7.57□□□□□ -1.2
YBX3-215ENST00000544504 SLC25A31Q9H0C2 315 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 PLEKHA3Q9HB20 300 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 PLSCR3Q9NRY6 295 aa7.57□□□□□ -1.2
YBX3-215ENST00000544504 FXYD6-FXYD2A0A087WZ82 144 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 TEX50A0A1B0GTY4 177 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 INS-IGF2F8WCM5 200 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 CYB5BO43169 146 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 CHST1O43916 411 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 SSSCA1O60232 199 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 TSC22D2O75157 780 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 CNTFRP26992 372 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 P2RY1P47900 373 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 HILS1P60008 231 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 RPL15P61313 204 aaKnown RBP7.56□□□□□ -1.2
YBX3-215ENST00000544504 POLR2GP62487 172 aaKnown RBP eCLIP7.56□□□□□ -1.2
YBX3-215ENST00000544504 ERHP84090 104 aaKnown RBP7.56□□□□□ -1.2
YBX3-215ENST00000544504 SIGLECL1Q8N7X8 197 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 C5orf56Q8N8D9 126 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 Q8N9W7 124 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 DTD1Q8TEA8 209 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 C22orf15Q8WYQ4 148 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 DCUN1D4Q92564 292 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 SMIM8Q96KF7 97 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 TMEM68Q96MH6 324 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 HINT2Q9BX68 163 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 RBKSQ9H477 322 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 HEYLQ9NQ87 328 aaPredicted RBP7.56□□□□□ -1.2
YBX3-215ENST00000544504 NDUFA4L2Q9NRX3 87 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 U3KQ87 197 aa7.56□□□□□ -1.2
YBX3-215ENST00000544504 CA2P00918 260 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 IGHV4-59P01825 116 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 SNCAP37840 140 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 HTR2BP41595 481 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 SUB1P53999 127 aaKnown RBP eCLIP7.55□□□□□ -1.2
YBX3-215ENST00000544504 GNB1P62873 340 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 TMEM267Q0VDI3 215 aaPredicted RBP7.55□□□□□ -1.2
YBX3-215ENST00000544504 OR2F1Q13607 317 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 FXYD3Q14802 87 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 LY6EQ16553 131 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 ACOT7LQ6ZUV0 252 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 TMEM219Q86XT9 240 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 STX12Q86Y82 276 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 OR1L6Q8NGR2 347 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 SRSF12Q8WXF0 261 aaKnown RBP7.55□□□□□ -1.2
YBX3-215ENST00000544504 ARPC1AQ92747 370 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 MAGT1Q9H0U3 335 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 TPSG1Q9NRR2 321 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 PSENENQ9NZ42 101 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 MBD2Q9UBB5 411 aa7.55□□□□□ -1.2
YBX3-215ENST00000544504 RCL1Q9Y2P8 373 aaKnown RBP7.55□□□□□ -1.2
YBX3-215ENST00000544504 STRAPQ9Y3F4 350 aaKnown RBP7.55□□□□□ -1.2
YBX3-215ENST00000544504 TRAV14DV4A0A0A6YYC5 116 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 A0A0D9SG52 128 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 MDFIC2A0A1B0GVS7 189 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 CLDN34H7C241 214 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 HOXA3O43365 443 aaPredicted RBP7.54□□□□□ -1.2
YBX3-215ENST00000544504 NXPH3O95157 252 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 CAV2P51636 162 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 RAB11AP62491 216 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 CX3CL1P78423 397 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 BAXQ07812 192 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 PJVKQ0ZLH3 352 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 ZNF345Q14585 488 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 OR2C3Q8N628 320 aa7.54□□□□□ -1.2
YBX3-215ENST00000544504 ABHD5Q8WTS1 349 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms