RNA–Protein interactions for RNA: ENST00000542407.5

PDLIM5-221, Transcript of PDZ and LIM domain 5, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene PDLIM5, Length 2,979 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-221ENST00000542407 UBTD1Q9HAC8 227 aa6.67□□□□□ -1.34
PDLIM5-221ENST00000542407 TRAPPC2LQ9UL33 140 aa6.67□□□□□ -1.34
PDLIM5-221ENST00000542407 MUC6Q6W4X9 2439 aa6.67□□□□□ -1.34
PDLIM5-221ENST00000542407 FREM1Q5H8C1 2179 aa6.67□□□□□ -1.34
PDLIM5-221ENST00000542407 IFNA1P01562 189 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 SERPINE2P07093 398 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 HERV-K104P61576 105 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 OR4F5Q8NH21 305 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 LHX4Q969G2 390 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 OR4F4Q96R69 305 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 C19orf24Q9BVV8 132 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 MAP1LC3CQ9BXW4 147 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 MRPS16Q9Y3D3 137 aaKnown RBP6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 SHANK1Q9Y566 2161 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 ANGPTL7O43827 346 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 YPEL1O60688 119 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 IL3RAP26951 378 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 UCNP55089 124 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 ZNF726P1Q15940 193 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 CYP2G1PQ6ZSU1 146 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 LRRC75A-AS1Q8N1F1 130 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 ZNF418Q8TF45 676 aaPredicted RBP6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 YPEL2Q96QA6 119 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 FGF23Q9GZV9 251 aaPredicted RBP6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 A0A087WX48 190 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 C3orf85A0A1B0GTC6 90 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 OR2T8A6NH00 312 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 GYPAP02724 150 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 EDN2P20800 178 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 SPATA45Q537H7 98 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 CT83Q5H943 113 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 SP5Q6BEB4 398 aaPredicted RBP6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 BAGE3Q86Y29 109 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 BAGE2Q86Y30 109 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 APOBEC3DQ96AK3 386 aaPredicted RBP6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 IMMP2LQ96T52 175 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 PARLQ9H300 379 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 WIPI2Q9Y4P8 454 aa6.66□□□□□ -1.34
PDLIM5-221ENST00000542407 KIAA2026Q5HYC2 2103 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 ZFHX2Q9C0A1 2572 aaPredicted RBP6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 IGKV1-12A0A0C4DH73 117 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 C5orf49A4QMS7 147 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 C1QTNF9BB2RNN3 333 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 TAX1BP3O14907 124 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 KBTBD11O94819 623 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 NRASP01111 189 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 IGKV1D-12P01611 117 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 MTCP1P56278 107 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 LCN2P80188 198 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 MEF2BQ02080 365 aaPredicted RBP6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 DAZAP2Q15038 168 aaPredicted RBP6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 C19orf35Q6ZS72 473 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 OR4B1Q8NGF8 309 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 GATAD1Q8WUU5 269 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 Q96M66 194 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 SLC39A9Q9NUM3 307 aa6.65□□□□□ -1.34
PDLIM5-221ENST00000542407 DNAJC13O75165 2243 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 ZNF816-ZNF321PA0A0X1KG74 233 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 IGLC7A0M8Q6 106 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 NPIPB5A8MRT5 1133 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 K7EM74 188 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 AADACP22760 399 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 IGHV1-2P23083 117 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 ADMP35318 185 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 HIST1H1AQ02539 215 aaPredicted RBP6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 Q6ZS92 163 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 ODF3L1Q8IXM7 274 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 LRTM2Q8N967 370 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 C9orf106Q8NAJ2 232 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 OR5AU1Q8NGC0 362 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 OR10G9Q8NGN4 311 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 PLPPR1Q8TBJ4 325 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 MRPL30Q8TCC3 161 aaKnown RBP6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 SPATA25Q9BR10 227 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 DKK4Q9UBT3 224 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 DCHS1Q96JQ0 3298 aa6.65□□□□□ -1.35
PDLIM5-221ENST00000542407 TRAV1-1A0A0B4J248 108 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 F5H768 121 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 MPPED1O15442 326 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 ZNF207O43670 478 aaKnown RBP6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 HYPMO75409 117 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 SERF1AO75920 110 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 NGFP01138 241 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 WNT2P09544 360 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 KIR2DL2P43627 348 aaPredicted RBP6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 MSMO1Q15800 293 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 ACSF3Q4G176 576 aaPredicted RBP6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 FFAR4Q5NUL3 377 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 PRR31Q5SQ13 230 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 SIGLEC15Q6ZMC9 328 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 FAM214BQ7L5A3 538 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 MDP1Q86V88 176 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 ZADH2Q8N4Q0 377 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 SPIN2AQ99865 258 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 SPIN2BQ9BPZ2 258 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 IL36GQ9NZH8 169 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 GVINP1Q7Z2Y8 2422 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 DOCK11Q5JSL3 2073 aa6.64□□□□□ -1.35
PDLIM5-221ENST00000542407 DUXBA0A1W2PPF3 345 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms