RNA–Protein interactions for RNA: ENST00000542238.5

RTN3-211, Transcript of reticulon 3, humanhuman

TSL 3

Gene RTN3, Length 735 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-211ENST00000542238 RHBDL2Q9NX52 303 aa11.45□□□□□ -0.58
RTN3-211ENST00000542238 FRAS1Q86XX4 4008 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 TRDV1A0A1B0GX56 115 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 TMEM235A6NFC5 223 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 CGB1A6NKQ9 187 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 TGOLN2O43493 480 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 SCGNO76038 276 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 FGF9P31371 208 aaPredicted RBP11.44□□□□□ -0.58
RTN3-211ENST00000542238 OR2B8PP59922 312 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 SPAG16Q8N0X2 631 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 PHLDA1Q8WV24 401 aaPredicted RBP11.44□□□□□ -0.58
RTN3-211ENST00000542238 TMEM190Q8WZ59 177 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 GPHA2Q96T91 129 aa11.44□□□□□ -0.58
RTN3-211ENST00000542238 SRSF8Q9BRL6 282 aaKnown RBP11.44□□□□□ -0.58
RTN3-211ENST00000542238 NAA50Q9GZZ1 169 aaKnown RBP11.44□□□□□ -0.58
RTN3-211ENST00000542238 DAZ1Q9NQZ3 744 aaKnown RBP11.44□□□□□ -0.58
RTN3-211ENST00000542238 IGLC7A0M8Q6 106 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 OR4C46A6NHA9 309 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 TNFSF12O43508 249 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 RPL35AP18077 110 aaKnown RBP11.43□□□□□ -0.58
RTN3-211ENST00000542238 TAS2R31P59538 309 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 ARPC4P59998 168 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 MSMO1Q15800 293 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 LGALS9CQ6DKI2 356 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 VN1R17PQ8TDU5 208 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 SECTM1Q8WVN6 248 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 GALNT14Q96FL9 552 aa11.43□□□□□ -0.58
RTN3-211ENST00000542238 C6orf62Q9GZU0 229 aaPredicted RBP11.43□□□□□ -0.58
RTN3-211ENST00000542238 OR2T8A6NH00 312 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 RBFOX2O43251 390 aaKnown RBP eCLIP11.42□□□□□ -0.58
RTN3-211ENST00000542238 DEDDO75618 318 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 HPRT1P00492 218 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 RPA2P15927 270 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 NQO2P16083 231 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 PSMB9P28065 219 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 CATR1Q13166 79 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 ODF3L2Q3SX64 289 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 THOC7Q6I9Y2 204 aaKnown RBP11.42□□□□□ -0.58
RTN3-211ENST00000542238 C22orf42Q6IC83 251 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 ZBTB34Q8NCN2 500 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 BSCL2Q96G97 398 aaPredicted RBP11.42□□□□□ -0.58
RTN3-211ENST00000542238 CCL28Q9NRJ3 127 aa11.42□□□□□ -0.58
RTN3-211ENST00000542238 SMIM30A4D0T7 59 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 UPK2O00526 184 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 FCGR2CP31995 323 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 SPSB3Q6PJ21 355 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 HSD17B13Q7Z5P4 300 aaPredicted RBP11.41□□□□□ -0.58
RTN3-211ENST00000542238 NR2C2APQ86WQ0 139 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 GDPD1Q8N9F7 314 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 C20orf24Q9BUV8 137 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 QTRT1Q9BXR0 403 aaKnown RBP11.41□□□□□ -0.58
RTN3-211ENST00000542238 MAP6D1Q9H9H5 199 aa11.41□□□□□ -0.58
RTN3-211ENST00000542238 TRAV3A0A0B4J244 114 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 NOTOA8MTQ0 251 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 SULT1C2O00338 296 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 NDUFA4O00483 81 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 SSX5O60225 188 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 GABARAPO95166 117 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 HNRNPCP07910 306 aaKnown RBP eCLIP11.4□□□□□ -0.583e-6■■■□□ 17
RTN3-211ENST00000542238 FGF2P09038 288 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 ZNF182P17025 639 aaPredicted RBP11.4□□□□□ -0.58
RTN3-211ENST00000542238 ZNF846Q147U1 533 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 POU2AF1Q16633 256 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 SLC25A24Q6NUK1 477 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 BEST4Q8NFU0 473 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 DMBX1Q8NFW5 382 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 OR10W1Q8NGF6 305 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 OR5B3Q8NH48 314 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 CD300LFQ8TDQ1 290 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 SLC5A7Q9GZV3 580 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 TMEM140Q9NV12 185 aa11.4□□□□□ -0.58
RTN3-211ENST00000542238 K7EMT4 169 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 PPYP01298 95 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 IFNA4P05014 189 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 SERPINE2P07093 398 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 CTSDP07339 412 aaPredicted RBP11.39□□□□□ -0.59
RTN3-211ENST00000542238 TRAPPC2P0DI81 140 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 TRAPPC2BP0DI82 140 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 OR13C7P0DN81 318 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 CMC4P56277 68 aaPredicted RBP11.39□□□□□ -0.59
RTN3-211ENST00000542238 CENPSQ8N2Z9 138 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 YIPF6Q96EC8 236 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 ATP6V0BQ99437 205 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 FUNDC2Q9BWH2 189 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 WDR12Q9GZL7 423 aaKnown RBP11.39□□□□□ -0.59
RTN3-211ENST00000542238 MFFQ9GZY8 342 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 C21orf62Q9NYP8 219 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 DAPK2Q9UIK4 370 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 KMT2AQ03164 3969 aa11.39□□□□□ -0.59
RTN3-211ENST00000542238 MPTX1A8MV57 137 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 TMEM127O75204 238 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 S1PR2O95136 353 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 FCGR2BP31994 310 aaPredicted RBP11.38□□□□□ -0.59
RTN3-211ENST00000542238 ERVK-16P61578 105 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 SPCS2Q15005 226 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 TPRA1Q86W33 373 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 UBAC2Q8NBM4 344 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 C11orf45Q8TAV5 145 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 GATAD1Q8WUU5 269 aa11.38□□□□□ -0.59
RTN3-211ENST00000542238 S100ZQ8WXG8 99 aa11.38□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 89.5 ms