RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 DKK2Q9UBU2 259 aa4.51□□□□□ -1.69
CD44-237ENST00000534082 IGHV3OR16-13A0A075B7E8 117 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 IGHV3-74A0A0B4J1X5 117 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 TMEM189A5PLL7 270 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 KNCNA6PVL3 124 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 J3QRE1 110 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 DNASE2O00115 360 aaPredicted RBP4.5□□□□□ -1.69
CD44-237ENST00000534082 IFNA5P01569 189 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 DAPP51397 102 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 CCL18P55774 89 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 MRPS15P82914 257 aaKnown RBP4.5□□□□□ -1.69
CD44-237ENST00000534082 C21orf62-AS1Q17RA5 79 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 OR2G6Q5TZ20 316 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 FAM222AQ5U5X8 452 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 TCF24Q7RTU0 167 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 ADGRG5Q8IZF4 528 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 ACBD7Q8N6N7 88 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 GPR148Q8TDV2 347 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 ZNF414Q96IQ9 312 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 NEDD4LQ96PU5 975 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 SRSF8Q9BRL6 282 aaKnown RBP4.5□□□□□ -1.69
CD44-237ENST00000534082 MS4A6AQ9H2W1 248 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 Q9H3A6 140 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 BATF3Q9NR55 127 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 IMPAD1Q9NX62 359 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 LINC00588Q9Y4M8 146 aa4.5□□□□□ -1.69
CD44-237ENST00000534082 TRAV2A0A0B4J234 112 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 IGKV1-6A0A0C4DH72 117 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 LINC00473A8K010 186 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 NUPL2O15504 423 aaKnown RBP4.49□□□□□ -1.69
CD44-237ENST00000534082 TMEM127O75204 238 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 KBTBD11O94819 623 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 DUTP33316 252 aaKnown RBP4.49□□□□□ -1.69
CD44-237ENST00000534082 MAS1LP35410 378 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 ERVFC1-1P60608 527 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 OXA1LQ15070 435 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 ACTL10Q5JWF8 245 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 UBE2UQ5VVX9 321 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 SPSB3Q6PJ21 355 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 VKORC1L1Q8N0U8 176 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 SYS1Q8N2H4 156 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 OR6M1Q8NGM8 313 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 VN1R17PQ8TDU5 208 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 MRPL48Q96GC5 212 aaKnown RBP4.49□□□□□ -1.69
CD44-237ENST00000534082 ADTRPQ96IZ2 230 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 HDHD3Q9BSH5 251 aaPredicted RBP4.49□□□□□ -1.69
CD44-237ENST00000534082 FAM107BQ9H098 131 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 OR51E2Q9H255 320 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 THYN1Q9P016 225 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 XCL2Q9UBD3 114 aa4.49□□□□□ -1.69
CD44-237ENST00000534082 TRAV8-7A0A075B6U6 113 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 TRBV6-6A0A0A6YYG2 114 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 RPS10-NUDT3A0A1W2PQS6 291 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 YIF1AO95070 293 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 NUDT3O95989 172 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 CD5P06127 495 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 ZNF688P0C7X2 276 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 GNB3P16520 340 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 IGFBP3P17936 291 aaPredicted RBP4.48□□□□□ -1.69
CD44-237ENST00000534082 GBX2P52951 348 aaPredicted RBP4.48□□□□□ -1.69
CD44-237ENST00000534082 LINC00315P59091 139 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 MS4A2Q01362 244 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 ARFRP1Q13795 201 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 USF2Q15853 346 aaPredicted RBP4.48□□□□□ -1.69
CD44-237ENST00000534082 ATP6AP1Q15904 470 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 MAJINQ3KP22 176 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 OR2B11Q5JQS5 317 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 GSG1LQ6UXU4 331 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 ZNF705AQ6ZN79 300 aaPredicted RBP4.48□□□□□ -1.69
CD44-237ENST00000534082 Q6ZRN7 208 aaPredicted RBP4.48□□□□□ -1.69
CD44-237ENST00000534082 SSX7Q7RTT5 188 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 LHFPL3Q86UP9 236 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 UBAC2Q8NBM4 344 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 OR8J1Q8NGP2 316 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 TMEM167AQ8TBQ9 72 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 NEU1Q99519 415 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 DCUN1D5Q9BTE7 237 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 C1QTNF4Q9BXJ3 329 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 Q9H8V8 135 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 CKLFQ9UBR5 152 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 RABAC1Q9UI14 185 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 MGAT4AQ9UM21 535 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 PUS1Q9Y606 427 aaKnown RBP eCLIP4.48□□□□□ -1.69
CD44-237ENST00000534082 RFNGQ9Y644 331 aa4.48□□□□□ -1.69
CD44-237ENST00000534082 TRAV14DV4A0A0A6YYC5 116 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 IGHV3-21A0A0B4J1V1 117 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 A0A1W2PPQ1 181 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 IGLC7A0M8Q6 106 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 CGB1A6NKQ9 187 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 ZNF705FA8MVS1 300 aaPredicted RBP4.47□□□□□ -1.69
CD44-237ENST00000534082 EBAG9O00559 213 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 ST8SIA3O43173 380 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 FCGR3BO75015 233 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 OXTP01178 125 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 EIF4EP06730 217 aaKnown RBP4.47□□□□□ -1.69
CD44-237ENST00000534082 CD3GP09693 182 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 ZNF705DP0CH99 300 aaPredicted RBP4.47□□□□□ -1.69
CD44-237ENST00000534082 ZNF705BP0CI00 300 aaPredicted RBP4.47□□□□□ -1.69
CD44-237ENST00000534082 GCSHP23434 173 aa4.47□□□□□ -1.69
CD44-237ENST00000534082 CRHBPP24387 322 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms