RNA–Protein interactions for RNA: ENST00000531480.2

CPSF1-206, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 789 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-206ENST00000531480 TMEM14BQ9NUH8 114 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 KLK9Q9UKQ9 250 aa11.3□□□□□ -0.6
CPSF1-206ENST00000531480 FOXA2Q9Y261 457 aaPredicted RBP11.3□□□□□ -0.6
CPSF1-206ENST00000531480 MSGN1A6NI15 193 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 H3BUA1 57 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 ACTL6BO94805 426 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 OPN1MWP04001 364 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 OPN1MW2P0DN77 364 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 OPN1MW3P0DN78 364 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 OR2B8PP59922 312 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 RAP2BP61225 183 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 GNB1P62873 340 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 ECSCRQ19T08 205 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 AARDQ4LEZ3 155 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 C10orf55Q5SWW7 151 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 UNQ5815/PRO19632Q6UWF5 114 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 C11orf44Q8N8P7 122 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 LRTM2Q8N967 370 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 RBPMSQ93062 196 aaKnown RBP11.29□□□□□ -0.6
CPSF1-206ENST00000531480 SRSF8Q9BRL6 282 aaKnown RBP11.29□□□□□ -0.6
CPSF1-206ENST00000531480 PDCD10Q9BUL8 212 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 MGAT4CQ9UBM8 478 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 TMED3Q9Y3Q3 217 aa11.29□□□□□ -0.6
CPSF1-206ENST00000531480 TSSC4Q9Y5U2 329 aaPredicted RBP11.29□□□□□ -0.6
CPSF1-206ENST00000531480 WNK1Q9H4A3 2382 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 C15orf61A6NNL5 157 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 HNRNPCP07910 306 aaKnown RBP eCLIP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 PET100P0DJ07 73 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 SULT1A3P0DMM9 295 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 SULT1A4P0DMN0 295 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 C4BPBP20851 252 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 RPL27AP46776 148 aaKnown RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 CDX1P47902 265 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 RPL23AP62750 156 aaKnown RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 PRR31Q5SQ13 230 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 THOC7Q6I9Y2 204 aaKnown RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 ZNF429Q86V71 674 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 FAM219AQ8IW50 185 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 SELENOHQ8IZQ5 122 aaKnown RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 TTC9CQ8N5M4 171 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 RNASE11Q8TAA1 199 aaKnown RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 FAM110DQ8TAY7 271 aaPredicted RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 RRNAD1Q96FB5 475 aaKnown RBP11.28□□□□□ -0.6
CPSF1-206ENST00000531480 NDUFA4L2Q9NRX3 87 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 PRNDQ9UKY0 176 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 ZNF257Q9Y2Q1 563 aa11.28□□□□□ -0.6
CPSF1-206ENST00000531480 A0A1W2PN81 502 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 TCRBV4S1A1TA0A5B7 111 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 C5orf51A6NDU8 294 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 DBX1A6NMT0 343 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 NPIPB5A8MRT5 1133 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 RPLP1P05386 114 aaKnown RBP11.27□□□□□ -0.61
CPSF1-206ENST00000531480 CRYGCP07315 174 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 GIPP09681 153 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-206ENST00000531480 MYOD1P15172 320 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 CHRNA7P36544 502 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 RAB9AP51151 201 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 C2orf68Q2NKX9 166 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 CXorf66Q5JRM2 361 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-206ENST00000531480 HIST2H2BDQ6DRA6 164 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 H2BFWTQ7Z2G1 175 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 OR5B3Q8NH48 314 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 ABHD5Q8WTS1 349 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 LSM10Q969L4 123 aaKnown RBP11.27□□□□□ -0.61
CPSF1-206ENST00000531480 ZNF436Q9C0F3 470 aaPredicted RBP11.27□□□□□ -0.61
CPSF1-206ENST00000531480 KLK15Q9H2R5 256 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 SLA2Q9H6Q3 261 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 FKBP11Q9NYL4 201 aa11.27□□□□□ -0.61
CPSF1-206ENST00000531480 TRBV9A0A0B4J1U6 114 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 A0A0B4J293 547 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 A0A0G2JRQ6 117 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 TEX50A0A1B0GTY4 177 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 IGLC7A0M8Q6 106 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 M0QZ24 198 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 RLN2P04090 185 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 HSD17B13Q7Z5P4 300 aaPredicted RBP11.26□□□□□ -0.61
CPSF1-206ENST00000531480 TCTE3Q8IZS6 198 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 ZNF491Q8N8L2 437 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 OR1L8Q8NGR8 309 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 UBE2E2Q96LR5 201 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 QTRT1Q9BXR0 403 aaKnown RBP11.26□□□□□ -0.61
CPSF1-206ENST00000531480 COMMD5Q9GZQ3 224 aa11.26□□□□□ -0.61
CPSF1-206ENST00000531480 INS-IGF2F8WCM5 200 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 GOSR2O14653 212 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 CTRB1P17538 263 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 AKR1C2P52895 323 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 RUNX1Q01196 453 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 SMCO1Q147U7 214 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 FCN2Q15485 313 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 PDLIM3Q53GG5 364 aaPredicted RBP11.25□□□□□ -0.61
CPSF1-206ENST00000531480 NMSQ5H8A3 153 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 TMEM268Q5VZI3 342 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 CTRB2Q6GPI1 263 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 Q6ZRM9 215 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 LCNL1Q6ZST4 164 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 OR52B4Q8NGK2 314 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 COA4Q9NYJ1 87 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 NSG2Q9Y328 171 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 OR51B2Q9Y5P1 312 aa11.25□□□□□ -0.61
CPSF1-206ENST00000531480 FAM25EA8MYX2 175 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms