RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 C9JCJ5 164 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 CRXO43186 299 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 LIPFP07098 398 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 CRYGCP07315 174 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 CSN3P07498 182 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 GCHFRP30047 84 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 KIR2DS4P43632 304 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF816Q0VGE8 651 aaPredicted RBP10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 KIR2DS1Q14954 304 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 Q6ZSR6 202 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 SH2D2AQ9NP31 389 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 UFC1Q9Y3C8 167 aa10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 LSM4Q9Y4Z0 139 aaKnown RBP10.02□□□□□ -0.81
LIMCH1-213ENST00000511496 CPAMD8Q8IZJ3 1885 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 DRD3P35462 400 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 REG1BP48304 166 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 SLC35E4Q6ICL7 350 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF418Q8TF45 676 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 HS3ST6Q96QI5 342 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 ANAPC13Q9BS18 74 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 OSTCQ9NRP0 149 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 C3orf80F5H4A9 247 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 ACTL6BO94805 426 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 RTL8BQ17RB0 113 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 RSPO1Q2MKA7 263 aaPredicted RBP10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF718Q3SXZ3 478 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 LIN28BQ6ZN17 250 aaKnown RBP eCLIP10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 LHFPL2Q6ZUX7 228 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF611Q8N823 705 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 GJC3Q8NFK1 279 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 OR52E5Q8NH55 327 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 LRRC29Q8WV35 223 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 VGLL1Q99990 258 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 C5orf49A4QMS7 147 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 J3KRW8 73 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 GAGE5Q13069 117 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 GAGE6Q13070 117 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 TIMM23BQ5SRD1 257 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 SLC25A47Q6Q0C1 308 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 LINC00696Q6ZRV3 163 aa10.01□□□□□ -0.81
LIMCH1-213ENST00000511496 A1L4Q6 167 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 PMS2P5A8MQ11 134 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 CHEK1O14757 476 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 P04436 131 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 FAM87AP0C7U9 286 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 CYBAP13498 195 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 WIPI1Q5MNZ9 446 aaPredicted RBP10□□□□□ -0.81
LIMCH1-213ENST00000511496 BADQ92934 168 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 SMIM27A0A1W2PRY6 76 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 PRSS38A1L453 326 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 KLK10O43240 276 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 IGLV3-1P01715 115 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 GCSHP23434 173 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 CFHR2P36980 270 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 PCSK4Q6UW60 755 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 GALMQ96C23 342 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 CHRNA10Q9GZZ6 450 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 FRG2CA6NGY1 282 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 LIPT2A6NK58 231 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 K7ERJ3 54 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 SP9P0CG40 484 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 SMIM13P0DJ93 91 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 ARL3P36405 182 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 C20orf204Q6ZNR8 217 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 C8orf86Q6ZUL3 223 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 H1FXQ92522 213 aaKnown RBP10□□□□□ -0.81
LIMCH1-213ENST00000511496 RAB1CQ92928 201 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 C10orf35Q96D05 121 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 AKIRIN1Q9H9L7 192 aaPredicted RBP10□□□□□ -0.81
LIMCH1-213ENST00000511496 IL23AQ9NPF7 189 aa10□□□□□ -0.81
LIMCH1-213ENST00000511496 A0A1W2PQU0 124 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 H3BMG7 143 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 IGHV3-7P01780 117 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 MT-ATP8P03928 68 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 ID1P41134 155 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 KLF5Q13887 457 aaPredicted RBP9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 DEC1Q9P2X7 70 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 COL6A3P12111 3177 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 PIGBOS1A0A0B4J2F0 54 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 A0A0J9YY10 115 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 VWC2LB2RUY7 222 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 K7EMI3 77 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 PPIFP30405 207 aaKnown RBP9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 AMTNQ6UX39 209 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 FOXI2Q6ZQN5 318 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 NUP35Q8NFH5 326 aa9.99□□□□□ -0.81
LIMCH1-213ENST00000511496 H0Y8X5 98 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 CER1O95813 267 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 BCL3P20749 454 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 SYT8Q8NBV8 401 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 SPTSSAQ969W0 71 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 LRRC30A6NM36 301 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF137PP52743 207 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 ZNF77Q15935 545 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 COLCA1Q6ZS62 124 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 Q8N7P7 452 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 MPC1Q9Y5U8 109 aa9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 RPL32P62910 135 aaKnown RBP9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 IGLV3-21P80748 117 aaPredicted RBP9.98□□□□□ -0.81
LIMCH1-213ENST00000511496 PSG5Q15238 335 aa9.98□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms